FastQCFastQC Report
Sun 2 Jul 2023
SRR3590774.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3590774.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12830269
Total Bases641.5 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATG521420.40639833817981524TruSeq Adapter, Index 6 (100% over 49bp)
AACATAAATATATAAACGCAAACAATGGCCAGATCGGAAGAGCACACGTC160740.12528186275751507No Hit
CCGTGATAGTTTAATGGTCAGAATGGGCGCAGATCGGAAGAGCACACGTC142960.111424008335289No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)