Basic Statistics
Measure | Value |
---|---|
Filename | SRR3590779.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8555462 |
Total Bases | 427.7 Mbp |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATG | 136222 | 1.5922226058627809 | TruSeq Adapter, Index 7 (100% over 49bp) |
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTAT | 18756 | 0.21922837130244982 | TruSeq Adapter, Index 7 (100% over 48bp) |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC | 9645 | 0.11273499899830074 | TruSeq Adapter, Index 7 (100% over 50bp) |
GCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTA | 9517 | 0.11123887874202468 | TruSeq Adapter, Index 7 (100% over 47bp) |