FastQCFastQC Report
Sun 2 Jul 2023
SRR3590783.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3590783.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8694102
Total Bases434.7 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATG1202571.383202083435414TruSeq Adapter, Index 8 (100% over 49bp)
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTAT142870.1643297950725676TruSeq Adapter, Index 8 (100% over 48bp)
AACATAAATATATAAACGCAAACAATGGCCAGATCGGAAGAGCACACGTC120280.13834666305962362No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)