FastQCFastQC Report
Mon 25 Sept 2023
SRR364368.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR364368.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24490400
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCAC5346272.183006402508738No Hit
CTGTAGGCACCATCAATTCGTATGCCGTCTTCTGCTTGAAAAA1995980.8150050632084408Illumina Single End Adapter 1 (95% over 22bp)
ATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCACTGT1744260.7122219318590142No Hit
AAGGCTGAGGCGTGATGACGAGGCACCTGTAGGCACCATCAAT1651580.6743785319962108No Hit
AGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCCTG1383030.5647233201581028No Hit
TAGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTCT1084390.4427816613856858No Hit
ATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACCTGTAG1082320.44193643223467155No Hit
AGCACTGTGCAAACACGAAAGTGGACGTATACGGTGCTGTAGG989440.4040113677195962No Hit
TACTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCAC930770.3800550419756313No Hit
GATTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCAC685610.27995051122072323No Hit
CATTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCAC681250.27817022180119555No Hit
TTGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACCTGTAG673660.2750710482474766No Hit
TTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCACTG649550.26522637441609775No Hit
TTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACGCC582620.23789729853330283No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACCCCTGTAGGCACCAT524610.21421046614183517No Hit
AATTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCAC510840.20858785483291414No Hit
AGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTCTG498470.20353689608989647No Hit
ACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACGCCTGT467420.19085845882468233No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCACC422700.1725982425766831No Hit
ACGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCACTGTAGG418910.1710506974161304No Hit
AGGCACGCTGATATGTAGGTGAAGCGACCTGTAGGCACCATCA405550.16559549864436676No Hit
ATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCTGT395240.16138568581974977No Hit
AGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCCTGTAGGC392820.16039754352725968No Hit
ATGTACACGGAGTCGACCCGCAACGCGACTGTAGGCACCATCA391140.1597115604481756No Hit
TAGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGCTG385230.15729836997354066No Hit
AGGTAACATCAAATCGTACCCCAAACCGCTGTAGGCACCATCA363830.14856025218044622No Hit
ATGGGAAACAGGTTAATATTCCTGTACTTGGTGCTGTAGGCAC361540.14762519191193285No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCCTGTAGGCACCATCA341720.1395322248717865No Hit
TGTAGGCACCATCAATTCGTATGCCGTCTTCTGCTTGAAAAAA340600.1390749028190638Illumina Single End Adapter 1 (95% over 22bp)
CGCAGGTTCGAATCCTGCACGACCCACCACTGTAGGCACCATC329710.13462826250285825No Hit
CGGTGGTTCAAGTCCACTCAGGCCTCTGTAGGCACCATCAATT327140.13357887172116423No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCTGTAGGCACC326880.1334727076732107No Hit
ACGTATCGGGGGTTCGAATCCCCCCCTCACCGCCACTGTAGGC322330.13161483683402478No Hit
TACGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCACTGTAG319360.13040211674778687No Hit
ACTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCACC318760.13015712279097116No Hit
ACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCCTGTAGG307840.12569823277692485No Hit
TTGGGAAACAGGTTAATATTCCTGTACTTGGTGCTGTAGGCAC295320.12058602554470323No Hit
TTGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCTGT284130.11601688825008984No Hit
ACAGCACTGTGCAAACACGAAAGTGGACGTATACGGTGCTGTA273390.11163149642308824No Hit
TTAGGTTAATGAGGCGAACCGGGGGAACTGACTGTAGGCACCA250630.10233805899454479No Hit
ACCGGAGTGGACGCATCACTGGTGTTCGGGTCTGTAGGCACCA248060.10128866821285075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)