FastQCFastQC Report
Mon 25 Sept 2023
SRR364370.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR364370.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24706067
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTCT1963260.7946469181031526No Hit
AGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCCTG1927000.7799703611262772No Hit
ATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCACTGT1828650.7401623253106211No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCAC1676940.6787563556757131No Hit
ATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACCTGTAG1333370.5396933473871013No Hit
CTGTAGGCACCATCAATTCGTATGCCGTCTTCTGCTTGAAAAA1091750.44189550688096163Illumina Single End Adapter 1 (95% over 22bp)
AGCACTGTGCAAACACGAAAGTGGACGTATACGGTGCTGTAGG1076720.43581198091950446No Hit
AGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTCTG983110.3979225021934895No Hit
TTGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACCTGTAG936610.3791012142887818No Hit
ATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCTGT778940.3152828817310339No Hit
TTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCACTG722150.29229662495451014No Hit
TTGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCTGT592910.23998558734581268No Hit
TTGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGCT538570.2179909898244832No Hit
TAGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGCTG507290.20533013206837009No Hit
ACGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCACTGTAGG496180.20083326091522377No Hit
TTAGGTTAATGAGGCGAACCGGGGGAACTGACTGTAGGCACCA469500.1900342940055979No Hit
AGGTTAATGAGGCGAACCGGGGGAACTGACTGTAGGCACCATC435780.17638582458308721No Hit
AAGGCTGAGGCGTGATGACGAGGCACCTGTAGGCACCATCAAT434750.17596892293702596No Hit
CGGTGGTTCAAGTCCACTCAGGCCTCTGTAGGCACCATCAATT418200.16927016347846865No Hit
AAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTCTGTAGGCA414360.1677158893805315No Hit
AGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGCTGT408230.16523471744814747No Hit
TACGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCACTGTAG400520.162114026485883No Hit
AGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCCTGTAGGC393220.15915928666428372No Hit
ACAGCACTGTGCAAACACGAAAGTGGACGTATACGGTGCTGTA392800.15898928793482184No Hit
TTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACGCC381120.15426170422026297No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCCTGTAGGCACCATCA378960.15338742504017333No Hit
AGGCACGCTGATATGTAGGTGAAGCGACCTGTAGGCACCATCA340110.13766254256494975No Hit
AGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCATGCCTG328450.1329430540279843No Hit
ATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGCT327030.13236829641885128No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACCCCTGTAGGCACCAT324670.1314130654628274No Hit
CGCAGGTTCGAATCCTGCACGACCCACCACTGTAGGCACCATC300800.12175147100507741No Hit
ATGGGAAACAGGTTAATATTCCTGTACTTGGTGCTGTAGGCAC297710.12050076606689361No Hit
TTAGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTC284010.11495556941539906No Hit
TACTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCAC278530.11273749075480125No Hit
TTGGGAAACAGGTTAATATTCCTGTACTTGGTGCTGTAGGCAC268660.10874252061244714No Hit
TAGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAC267020.10807871604978647No Hit
TCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCCTGTA266150.10772657582447259No Hit
AGGTAACATCAAATCGTACCCCAAACCGCTGTAGGCACCATCA259270.10494183473233518No Hit
ACGTATCGGGGGTTCGAATCCCCCCCTCACCGCCACTGTAGGC258400.1045896945070213No Hit
ACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCCTGTAGG254210.10289375480119922No Hit
AGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGCTGTA251070.10162281191903187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)