FastQCFastQC Report
Thu 28 Sept 2023
SRR3710289.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3710289.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35986203
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAAGGTATGGCTTCTAAACCATTTAAAGTTTATTCG699580.19440228245252772No Hit
CAAGCAGCGTATGGCTTCTAAACCATTTAAAGTTTATTCG496810.13805568762005818No Hit
AGCAGAGGGTATGGCTTCTAAACCATTTAAAGTTTATTCG443340.12319721533277628No Hit
CAGCAGAAGTATGGCTTCTAAACCATTTAAAGTTTATTCG427910.11890946093979407No Hit
CAAGCAGTGTATGGCTTCTAAACCATTTAAAGTTTATTCG410700.11412707253388193No Hit
AGCGTTAAGGCATTAACGCGAACTCGGCCTACAATAGTGA378310.10512640080421934No Hit
AAGATGGCTAAACGACAATGGATGTGATGCCAATGTTCGT365390.10153613594632366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)