FastQCFastQC Report
Thu 28 Sept 2023
SRR3710300.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3710300.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29454757
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAAGGTATGGCTTCTAAACCATTTAAAGTTTATTCG1215030.4125072225175716No Hit
AAGATGGCTAAACGACAATGGATGTGATGCCAATGTTCGT1096670.372323560503317No Hit
AAGATGGCTATAAACGACAATGGATGTGATGCCAATGTTC847440.28770904475633596No Hit
CAAGCAGCGTATGGCTTCTAAACCATTTAAAGTTTATTCG751040.25498088475148517No Hit
AAGCAGAGGTATGGCTTCTAAACCATTTAAAGTTTATTCG673610.22869311058991254No Hit
AGAGAGGCTAAACGACAATGGATGTGATGCCAATGTTCGT667710.22669003855642061No Hit
GCAAGCAGGTATGGCTTCTAAACCATTTAAAGTTTATTCG641550.2178086208621582No Hit
CAGCAGAAGTATGGCTTCTAAACCATTTAAAGTTTATTCG580240.19699364690056687No Hit
AAGATGGCATAAACGACAATGGATGTGATGCCAATGTTCG532000.18061598674876184No Hit
AGAGAGGCATAAACGACAATGGATGTGATGCCAATGTTCG530610.18014407655782053No Hit
AGCAGAGGGTATGGCTTCTAAACCATTTAAAGTTTATTCG529940.17991660905571213No Hit
CAAGCAGTGTATGGCTTCTAAACCATTTAAAGTTTATTCG528680.17948883435025453No Hit
CAAGCAGAGTATGGCTTCTAAACCATTTAAAGTTTATTCG468220.1589624385629798No Hit
AGAGAGGCTATAAACGACAATGGATGTGATGCCAATGTTC456040.15482728307688975No Hit
AAGATGGCAAACGACAATGGATGTGATGCCAATGTTCGTA414550.14074127313289328No Hit
GCAGCAGAGTATGGCTTCTAAACCATTTAAAGTTTATTCG383930.13034566878280476No Hit
CAAGCAGGGTATGGCTTCTAAACCATTTAAAGTTTATTCG380250.129096295039881No Hit
AAGATGGCTATAAACGACAATGGATGTGATGCCAATGTCG375200.12738180118070572No Hit
AGCAGAAGTATAAACGACAATGGATGTGATGCCAATGTTC349670.11871427083917209No Hit
AGGCAGAAGTATGGCTTCTAAACCATTTAAAGTTTATTCG339630.11530565334489093No Hit
CAGCAGAGGTATGGCTTCTAAACCATTTAAAGTTTATTCG338150.11480318781784551No Hit
AGAAGCGGTAAACGACAATGGATGTGATGCCAATGTTCGT311550.10577238848040742No Hit
AAGCAGGCGTATGGCTTCTAAACCATTTAAAGTTTATTCG311350.10570448773350939No Hit
GCAGAAGAGTATGGCTTCTAAACCATTTAAAGTTTATTCG308260.10465542119393481No Hit
AGAGAGGCTATAAACGACAATGGATGTGATGCCAATGTCG299020.10151840668724581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)