FastQCFastQC Report
Sun 2 Jul 2023
SRR3726645.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3726645.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43087918
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG4239660.9839556415791545No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGT2796210.6489545398782091No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTAGG2738110.6354704815396279No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCAT2501430.5805409302904818No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGTAGGCA2313660.5369625889094943No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCTGTAGGCA2225420.5164835302555115No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCTGTA2040670.4736060814077858No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACCTGTAGGC2040480.47356198551993156No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCTGTAGG1955460.4538302361232678No Hit
CCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAA1794560.4164879816193486No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCTGTAG1519640.35268355273048935No Hit
GTCTAGGGGTATGATTCTCGCTTCTGTAGGCACCATCAAT1500940.34834358903115253No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCT1469320.3410051049577285No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCA1308570.30369766299685214No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCCTGTAGGC1262230.2929429080328272No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCAT1233930.2863749415787507No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCA1227210.2848153396504328No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG1146460.26607458731238764No Hit
GCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATA1116360.25908887034179745No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCT1115590.2589101659541777No Hit
TTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTAGGCACC1112890.25828354017940713No Hit
CGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAAT1012290.23493592797869697No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATC983240.22819389880940638No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTC933440.216636134519194No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTA894890.2076893109571922No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTAG868930.2016644201745835No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCA828820.19235554616493655No Hit
CCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCA784320.18202782506223672No Hit
ATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTGTAGGCA768350.17832144964627902No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG734880.17055361087532703No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGTAGGC733880.17032152725504165No Hit
CCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATCAAT728040.16896615891257497No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGCTGTAGGCAC692920.1608153821681521No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCAC667630.1549459874111346No Hit
ATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTAGGC663040.15388072359402466No Hit
TCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCT653490.1516643250202992No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGT645350.14977516435117613No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACCTGTAGG631310.14651671032236924No Hit
TCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTC622160.14439314519675794No Hit
CCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATA621700.14428638673142666No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTG616130.14299368096643705No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGT615720.14289852668212003No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATC589730.13686667339090278No Hit
TTTCCCGCTCCCCGTTCCTCCCGACCCCCTGTAGGCACCA587580.13636769360728918No Hit
CTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATAGATC576190.1337242611722386No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTG575180.13348985671575034No Hit
CCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCA548020.12718646558879917No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCT541600.12569648874656697No Hit
TCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAA525670.1219993966754207No Hit
GCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCAAT518300.1202889403939174No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAG502580.11664058588303106No Hit
CCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATAGAT478860.11113556240986161No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCTGTAGGCACCATCA468720.10878223450016776No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGT461180.10703232400321593No Hit
CGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCAA458530.10641730240945967No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGC453380.10522207176498989No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)