FastQCFastQC Report
Sun 2 Jul 2023
SRR3726647.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3726647.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42587722
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTAGG4534851.0648256791006572No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTC4492971.0549918589212166No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG3691570.8668155577797751No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACCTGTAGGC3018830.7088498417454683No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGTAGGCA2701150.6342555725333231No Hit
ATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTAGGC2571430.6037960893987239No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCT2554510.5998231133376891No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCT2292020.538187978215881No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGT2048790.48107527329120825No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCT1914030.449432350478854No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCAT1523320.3576899464122547No Hit
ATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTGTAGGCA1514110.3555273512868333No Hit
TCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTC1468060.34471437565972657No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCTGTA1450460.34058172916597884No Hit
CCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAA1399650.3286510605098812No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCTGTAGGCA1382710.3246733882596491No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTG1282630.3011736575156567No Hit
CTCCCCGTTCCTCCCGACCCCTCTGTAGGCACCATCAATA1274590.29928578945828566No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCA1242730.29180476006676287No Hit
CGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTA1159830.2723390558433719No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTG1070280.25131186871183203No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTAG1058430.2485293766123485No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCTGTAGG1009070.2369391816730653No Hit
CGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAAT945680.2220546100117776No Hit
GCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATA920400.21611862686621275No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCTGTAG901210.2116126333312686No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCA898660.2110138692085949No Hit
GTCTAGGGGTATGATTCTCGCTTCTGTAGGCACCATCAAT879000.20639751522751087No Hit
GATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTAGG861040.20218033732820928No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG859280.20176707267883454No Hit
CCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCA826920.19416863855737576No Hit
CGCTCCCCGTTCCTCCCGACCCCTCTGTAGGCACCATCAA795310.18674631153082102No Hit
TCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCT790010.18550182139349927No Hit
TTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTAGGCACC756670.17767327400136593No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCCTGTAGGC702940.16505696172244197No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACCTGTAGG699930.16435018524822717No Hit
CCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATA678450.15930647805017606No Hit
CGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTGTAG675740.15867014441392288No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGC648970.15238429517314872No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTA648320.1522316690242319No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGTAGGC641170.15055278138614694No Hit
CTCCCCGTTCCTCCCGACCCCCTGTAGGCACCATCAATAG640670.1504353766562109No Hit
ATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTGTAGGCAC629120.14772332739468902No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGT623870.14649057773036087No Hit
GCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGT617450.14498310099798245No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATC604420.14192353373584995No Hit
CCGCTCCCCGTTCCTCCCGACCCCTCTGTAGGCACCATCA602090.14137642769434813No Hit
CCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATAG595580.13984781811058125No Hit
GCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCAAT589520.13842487278375679No Hit
CGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCAA587360.13791768435043322No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG571980.13430631485760144No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCAC534630.12553618153138127No Hit
GCTACGCCTGTCTGAGCGTCGCTCTGTAGGCACCATCAAT524450.12314582122988406No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTGT523760.12298380270257235No Hit
CGGCGGCTCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCT517020.1214011869430349No Hit
TTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTAGGCACCA506670.11897090903335943No Hit
CCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATCAAT506460.11892159904678631No Hit
TTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTAGGCAC506310.11888637762780549No Hit
GATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTGTAGGC497140.11673317488077903No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGCTGTAGGCAC486500.11423480222774066No Hit
CCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCA482530.11330260867204872No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTC474680.11145935441205332No Hit
CGGGGGGCGGGTCGGGGGTCGGCGCGCGGCGCGGGCTGTA469410.11022190855852773No Hit
CCGTTCCTCCCGACCCCTCTGTAGGCACCATCAATAGATC466510.10954096112489886No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCT461040.10825655337939888No Hit
GCTCCCCGTTCCTCCCGACCCCTCTGTAGGCACCATCAAT456070.1070895503638349No Hit
CTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATAGATC449110.1054552765231256No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)