FastQCFastQC Report
Sun 2 Jul 2023
SRR3726649.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3726649.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35037219
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTAGG4640331.3244002042513705No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTC3240610.9249050274224105No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG2572870.7343248332580277No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCT2306680.6583513377588558No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGTAGGCA2049710.5850093296502785No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACCTGTAGGC2044130.583416737498487No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCTGTA2009870.573638564179423No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGT1945630.5553037756792284No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCTGTAGGCA1570370.44820052641735064No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCT1481040.4227047814496921No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTG1295590.3697753523189155No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTAG1244540.35520513200548254No Hit
ATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTAGGC1243870.3550139067829556No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCT1206530.34435666826182754No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCTGTAG1155060.3296665754208403No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCTGTAGG1137350.3246119505089716No Hit
TCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTC1003960.2865410065793178No Hit
CCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAA947280.2703639235750988No Hit
ATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTGTAGGCA879010.2508789296319437No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCAT844670.24107792345048848No Hit
CGGGGGGCGGGTCGGGGGTCGGCGCGCGGCGCGGGCTGTA823990.23517562852234364No Hit
TCAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTA820320.23412817096014385No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTG794040.22662757566460967No Hit
GTCTAGGGGTATGATTCTCGCTTCTGTAGGCACCATCAAT769830.2197177806834498No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCCTGTAGGC709200.20241332509866153No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCA671140.19155059081601197No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG641460.1830795988688486No Hit
GCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATA631210.18015413837496633No Hit
TCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCT628030.17924653209491312No Hit
CCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCA614050.17525648939203767No Hit
CTCCCCGTTCCTCCCGACCCCTCTGTAGGCACCATCAATA603660.17229107138897068No Hit
CGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAAT601810.17176306144617243No Hit
CGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTA583580.1665600229287604No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCA562340.16049789796387665No Hit
TTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTAGGCACC560550.15998701266787185No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGTAGGC548440.15653068812339244No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACCTGTAGG539690.15403334379934663No Hit
CGCTCCCCGTTCCTCCCGACCCCTCTGTAGGCACCATCAA496100.14159228790390013No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGCTGTAGGCAC488220.13934325095835945No Hit
ATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTGTAGGCAC482510.13771355540518213No Hit
CCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATCAAT461310.131662846871494No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTA459240.13107204655711974No Hit
TCGGGGGTCGGCGCGCGGCGCGGGCTGTAGGCACCATCAA458100.13074667826804404No Hit
CAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTAG454160.1296221597952737No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATC439460.12542662133087676No Hit
GCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCAAT434780.1240908988809871No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG420030.1198810898775956No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTGT416640.11891354733376527No Hit
CGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTGTAG411040.11731524696637595No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGT410550.1171753956842294No Hit
CGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCAA405640.11577402875496484No Hit
GATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTAGG403740.11523174827317202No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCAC392420.11200089824480648No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACCTGTAG384890.10985175507222762No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGT384010.1096005935859236No Hit
GTGTAATGGTTAGCACTCTGGACTCTGTAGGCACCATCAA382990.10930947459043483No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCT377760.10781677621160515No Hit
GTCGGGGGTCGGCGCGCGGCGCGGGCTGTAGGCACCATCA375900.10728591216100798No Hit
CCGCTCCCCGTTCCTCCCGACCCCTCTGTAGGCACCATCA375250.10710039515407888No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGC373070.1064781996539166No Hit
CTCCCCGTTCCTCCCGACCCCCTGTAGGCACCATCAATAG369780.10553919818807538No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCTGTA359230.10252811446022586No Hit
CCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAATA356410.10172325606093338No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTC355920.1015834047787868No Hit
TCAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACCTGTAG353320.10084133675107033No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)