FastQCFastQC Report
Mon 3 Jul 2023
SRR3726650.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3726650.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50902710
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length40
%GC68

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG12041432.365577392637838No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTA8162121.6034745497833025No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGT5924071.1638024773140763No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCA4553490.8945476576787366No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCAT3905290.7672066968536646No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCT3893320.7648551521127265No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAG3774740.7415597322814443No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGTAGGCA3610770.7093473019412915No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACCTGTAGGC3607920.7087874103363063No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG3518470.6912146720675579No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCT2594190.509636913240965No Hit
CCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAA2495150.4901801888347398No Hit
TCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTC2313660.4545258985228881No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGT2275830.4470940741661888No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTG2112310.41497004776366525No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTG2098860.4123277522945242No Hit
CGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACC2009010.39467643274788317No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTAGG1993760.3916805215282251No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCTGTAGG1834420.36037766947968No Hit
TCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCT1833430.3601831808168956No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCTGTA1829110.3593345030156548No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGT1828380.35919109218350065No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTC1821720.3578827139065877No Hit
ATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTAGGC1796220.35287315744092995No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCAC1687290.33147351093880856No Hit
GTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCA1674650.3289903425574002No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCT1565850.3076162349705939No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCA1536840.301917127791428No Hit
ATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTGTAGGCA1499910.2946621113099872No Hit
CCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCAC1489920.2926995438946178No Hit
ATGCCGACTGGCGATGCGGCGGCGTTATTCTGTAGGCACC1481100.2909668267170844No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCCTGTAGGC1478220.2904010415162572No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGT1474650.2896997036110651No Hit
TATAAACGATGCCGACTGGCGATGCGGCGGCGTTATTCTG1471160.28901408196145156No Hit
CCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGC1462970.28740513029659914No Hit
ATAAACGATGCCGACTGGCGATGCGGCGGCGTTATTCTGT1364470.2680544906155291No Hit
CCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCA1348580.2649328493512428No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCT1176470.23112129000597414No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCTGTAGGCA1158640.22761852954390838No Hit
CCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCA1139260.2238112666300085No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCATC1138640.2236894656492749No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCCTG1133130.22260700854630336No Hit
TAAACGATGCCGACTGGCGATGCGGCGGCGTTATTCTGTA1117790.21959341653911943No Hit
TGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACC1112590.2185718599265147No Hit
GCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGC1099100.2159217063295844No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGTAGGC1072450.21068622868998527No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACCTGTAGG1054590.20717757463207756No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCTGTAGGCA1046960.20567863675627485No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGT984970.19350050321485832No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCTGTAG976080.19175403431369373No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCTGTAGG936820.18404128188852814No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCGTCGCTGTAGGCAC930650.1828291656770337No Hit
AAAACGATGCCGACTGGCGATGCGGCGGCGTTATTCTGTA928610.1824284011597811No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCCTG928400.18238714598888742No Hit
CGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAAT836580.164348813648625No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCCTGTAGGCAC823570.1617929575851659No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCCCCCCCTG813700.15985396455316425No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGTA799970.15715666218949836No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATC799920.15714683952976177No Hit
CGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGTA792080.15560664648306544No Hit
CCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAG765920.1504674309088848No Hit
TCGCCCCTTGCCTCTCGGCGCCCCCTGTAGGCACCATCAA717840.14102196130618586No Hit
CCGACTGGCGATGCGGCGGCGTTATTCTGTAGGCACCATC705940.13868416828887892No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCCTGTAGGC698100.13714397524218258No Hit
CGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCAC683820.13433862362141427No Hit
CGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCCTGTAG668350.13129949269891525No Hit
CGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCA668320.13129359910307328No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCT659890.12963749867148527No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTGT658500.12936442873080822No Hit
CGGGCGGGCGTCCCGCGCGTGTGGGGGGACTGTAGGCACC657440.12915618834439266No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTCCTGTAGGCA655190.12871416865624638No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCTGTAGGCA651870.12806194404973723No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCCTG628790.12352780431533017No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTC622150.12222335510231185No Hit
GTCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCT603680.11859486459561779No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCCCCCCTGT598390.11755562719548723No Hit
GTCCCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACC595540.11699573559050196No Hit
TCGCTTCTGGCGCCAAGCGTCCGTCCCGCCTGTAGGCACC590070.1159211366153197No Hit
GCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTCTGT580160.11397428545552879No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGTAG579310.11380730024000688No Hit
TCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTG567770.11154023037280333No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCCCCCCCTGTA562690.11054224814356642No Hit
TCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCCTGTAG561620.11033204322520353No Hit
GCTTCTGGCGCCAAGCGTCCGTCCCGCCTGTAGGCACCAT551240.10829285906388873No Hit
CGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGACTGTA548260.10770742854358833No Hit
CGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATCAA544410.1069510837438714No Hit
CCCGCCCCTTGCCTCTCGGCGCCCCCCTGTAGGCACCATC531670.10444827004298986No Hit
GTCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACCAT524840.10310649472297251No Hit
CCGTCCCCGCCCCTTGCCTCTCGGCGCCCCTGTAGGCACC519880.10213208687710341No Hit
CTTCTGGCGCCAAGCGTCCGTCCCGCCTGTAGGCACCATC516940.10155451448459227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)