FastQCFastQC Report
Mon 25 Sept 2023
SRR387871.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR387871.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21155927
Total Bases846.2 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGATGATTCATAATAACTTTTCGAATCGCATAAAAAAAA7856313.7135267105052874No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATAAAAAAA3112821.4713701744196792No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATAAAAAA2664601.259505196817894No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAA2363571.1172141026956655No Hit
TGATGATTCATAATAACTTTTCGAATCGCATAAAAAAAAA1538850.7273848127761077No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAA1256960.5941408287143362No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAA1253780.5926377038453574No Hit
TTTGCTCGAATATATTAGCATGGAATAAAAAAAAAAAAAA1032760.48816579864356685No Hit
TTGCTCGAATATATTAGCATGGAATAATAAAAAAAAAAAA953710.45080038326848076No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAATAAAAAAA867450.41002693949548985No Hit
TTTGCTCGAATATATTAGCATGGAATAATAAAAAAAAAAA832830.3936627310162301No Hit
TTGCTCGAATATATTAGCATGGAATAAAAAAAAAAAAAAA713100.3370686616568491No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAAAAAAA613950.2902023626759536No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAAAAAAAAAA604890.2859198748416933No Hit
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAAAAAAA600930.28404805896711594No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA598190.2827529136397568No Hit
TGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAA536550.25361687058194143No Hit
TTGATGATTCATAATAACTTTTCGAATCGCACAAAAAAAA462900.21880393139946078No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAATAAAAAA442370.20909979505979578No Hit
TTTGCTCGAATATATTAGCATGGAAAAAAAAAAAAAAAAA420010.19853065289930336No Hit
GGCGCCAGTGAAATACCACTACCTTTATAAAAAAAAAAAA411460.1944892322610113No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATGAAAAAAA393720.1861038752875258No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAAAAAAAA364240.17216924599900538No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA333890.15782338443500965No Hit
TTGCTCGAATATATTAGCATGGAAAAAAAAAAAAAAAAAA333280.1575350491614005No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATTAAAAAAA327010.15457134069331965No Hit
GGAATGCAGCTCTAAGTGGGTGGTAAAAAAAAAAAAAAAA310170.14661139641860174No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAAAAAAAAAAAA301490.1425085272793766No Hit
GATGATTCATAATAACTTTTCGAATCGCATAAAAAAAAAA265780.1256290967538317No Hit
TGCTCGAATATATTAGCATGGAATAATAAAAAAAAAAAAA231080.10922707381245927No Hit
TGCTCGAATATATTAGCATGGAATAATAGAATAAAAAAAA229460.10846133095467761No Hit
ATATTAGCATGGAATAATAGAATAAAAAAAAAAAAAAAAA227550.10755851067173752No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA217990.10303968244927296No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)