FastQCFastQC Report
Mon 25 Sept 2023
SRR387885.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR387885.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12537436
Total Bases501.4 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAA1902011.5170645736496682No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAAAAAAA1608101.2826386511564247No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAA1499611.1961058066418047No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAA1348631.0756824601138542No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAA1326181.0577760875509155No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAA1317341.0507252041007429No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAA1253290.9996382035369912No Hit
TGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCAAAAAA924050.7370326755805573No Hit
GGGAATACTGCCAGCTGGGACTGAGGAAAAAAAAAAAAAA750020.5982243897396565No Hit
ATAAATCATTTGTATACGACTTAGACAAAAAAAAAAAAAA710590.566774578151386No Hit
GGAATACTGCCAGCTGGGACTGAGGAAAAAAAAAAAAAAA690600.5508303292634954No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAA636200.5074402772624322No Hit
AAAAATATGTACAGTAAAATTGTAAGAAAAAAAAAAAAAA589020.4698089784865103No Hit
ATAAATCATTTGTATACGACTTAGAAAAAAAAAAAAAAAA576160.459551697811259No Hit
GGGAATACTGCCAGCTGGGACTGAGAAAAAAAAAAAAAAA553280.4413023524108119No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAA532580.42479179953540736No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGACAAAAAAAAAA528530.4215614739728282No Hit
GAATACTGCCAGCTGGGACTGAGGAAAAAAAAAAAAAAAA527180.42048469878530187No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGACAAAAAAAAAAA525560.4191925685602702No Hit
TGTTAATAGATAATATACGGATCTTAATAAAAAAAAAAAA510960.4075474443099849No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAA466100.3717666036341083No Hit
ATAAATCATTTGTATACGACTTAGATGAAAAAAAAAAAAA446910.35646044374623326No Hit
GGAATACTGCCAGCTGGGACTGAGAAAAAAAAAAAAAAAA411050.32785810432053253No Hit
ATAAATCATTTGTATACGACTTAGGTAAAAAAAAAAAAAA394700.314817160382713No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAA386470.3082528197950522No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATGAAAAAAAAAA362900.2894531226320916No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATGAAAAAAAAA359100.28642219988201734No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA328000.2616164900064096No Hit
AATACTGAATATCTAAATATTATTATTACAAAAAAAAAAA327030.2608428070938906No Hit
GTTAATAGATAATATACGGATCTTAATAAAAAAAAAAAAA310640.24776995870607038No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGGTAAAAAAAAAAA302460.2412454986809105No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGAGAAAAAAAAAAA300650.23980182231837516No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAA300030.23930730334336303No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGGTAAAAAAAAAA299130.23858945321834543No Hit
TGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAA295500.23569412438077453No Hit
TTTTAAAACCTAAAGGTAAACCTTTATAAAAAAAAAAAAA295150.23541496044326765No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGAGAAAAAAAAAA280200.22349067225547553No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGTAAAAAAAAAA275570.21979773216788506No Hit
GAATACTGCCAGCTGGGACTGAGAAAAAAAAAAAAAAAAA272970.21772394291783423No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAA268720.2143340951052512No Hit
GGAATGCAGCTCTAAGTGGGTGGTAAAAAAAAAAAAAAAA260190.2075304711425845No Hit
GGGGAATACTGCCAGCTGGGACTGAGGAAAAAAAAAAAAA258250.2059831053175466No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAAA246010.1962203436173074No Hit
TTTTAAAACCTAAAGGTAAACCTTTAAAAAAAAAAAAAAA239890.1913389627671878No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCAAAAA239420.19096408547967864No Hit
ACTGCCAGCTGGGACTGAGGAAAAAAAAAAAAAAAAAAAA221750.17687029469183332No Hit
GGGAATACTGCCAGCTGGGACTGAAAAAAAAAAAAAAAAA217550.17352032744175125No Hit
AATACTGAATATCTAAATATTATTATTACTAAAAAAAAAA212920.16982738735416078No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGACAAAAAAAAAAA210940.16824811707912207No Hit
TGGGAATACTGCCAGCTGGGACTGAGGAAAAAAAAAAAAA205810.16415637136652184No Hit
ATATAAAGAATGGTACAGCAATTAATATAAAAAAAAAAAA199430.15906761159139715No Hit
AAAAAATATGTACAGTAAAATTGTAAGAAAAAAAAAAAAA195790.15616430664132602No Hit
TTTTTAAAACCTAAAGGTAAACCTTTATAAAAAAAAAAAA186790.14898580539115014No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA166410.1327304881157519No Hit
TGTTAATAGATAATATACGGATCTTAACAAAAAAAAAAAA163270.13022598879069053No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAAAAAAAAAAAA159790.12745030164062254No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATTAAAAAAAAAA159140.12693185432810983No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCAAAAAA158850.12670054706560416No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATAAAAAAAA158480.12640543090309694No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATTAAAAAAAAA156700.12498568287806215No Hit
TTTTTAAAACCTAAAGGTAAACCTTTAAAAAAAAAAAAAA156120.12452306835305083No Hit
AAAAATATGTACAGTAAAATTGTAAAAAAAAAAAAAAAAA150440.11999263645293982No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATGAAAAAAAAAA148850.11872443456540874No Hit
TATAAATCATTTGTATACGACTTAGATAAAAAAAAAAAAA146760.11705742705286791No Hit
GGAATACTGCCAGCTGGGACTGAAAAAAAAAAAAAAAAAA143730.1146406649653087No Hit
TTTGCTCGAATATATTAGCATGGAAAAAAAAAAAAAAAAA143210.11422590711529852No Hit
GTCAATTAAAATGTTACGTGAGTTGGGTAAAAAAAAAAAA137920.11000654360269517No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCAAAAA137650.10979118856518988No Hit
AGTTTTGGTGGCAGGATAAATCCAAAAAAAAAAAAAAAAA134990.1076695426401379No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATCAAAAAAAAAA131250.10468647656506481No Hit
CAGTTAAAAAGCTCGTAGTTGAACTTTGAAAAAAAAAAAA130420.1040244592275486No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATCAAAAAAAAA127640.10180709995249426No Hit
ATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAAA125420.1000364029774509No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)