FastQCFastQC Report
Mon 25 Sept 2023
SRR387891.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR387891.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11620421
Total Bases464.8 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAA702690.6047027039726013No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAA638800.5497219076658239No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAAAAAAA628660.5409958899079474No Hit
TGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAA274160.23592948999007868No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA212960.183263583995795No Hit
ATAAATCATTTGTATACGACTTAGACAAAAAAAAAAAAAA206090.1773515778817308No Hit
ATAAATCATTTGTATACGACTTAGAAAAAAAAAAAAAAAA204830.1762672798171426No Hit
ATAAATCATTTGTATACGACTTAGATGAAAAAAAAAAAAA192890.16599226482414017No Hit
ATAAATCATTTGTATACGACTTAGGTAAAAAAAAAAAAAA181690.15635405980557848No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA124310.10697547016583994No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)