FastQCFastQC Report
Mon 25 Sept 2023
SRR387898.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR387898.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11782015
Total Bases471.2 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAA3356162.848545006944907No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAA3148722.6724800469189693No Hit
TGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAA1955051.6593511381542123No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAA1264221.0730083096991474No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAAAAAAA1190021.010030966689484No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAA993080.842877894825291No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAAA965040.8190789096771647No Hit
TGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCAAAAAA670460.5690537654212798No Hit
ATAAATCATTTGTATACGACTTAGACAAAAAAAAAAAAAA589570.5003982765257047No Hit
TTGATGATTCATAATAACTTTTCGAATCACAAAAAAAAAA543010.4608804181627676No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAA491870.4174752790588028No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA436000.37005554652578526No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGACAAAAAAAAAAA431310.3660749031468726No Hit
ATAAATCATTTGTATACGACTTAGATGAAAAAAAAAAAAA384210.3260987191070458No Hit
ATAAATCATTTGTATACGACTTAGAAAAAAAAAAAAAAAA373450.31696615561939107No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATGAAAAAAAAAA373440.3169576681068561No Hit
ATAAATCATTTGTATACGACTTAGGTAAAAAAAAAAAAAA370670.3146066271346624No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGACAAAAAAAAAAAA349890.2969695760869427No Hit
TTTGATGATTCATAATAACTTTTCGAATCACAAAAAAAAA337000.286029172429334No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAA331100.28102154003368696No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATAAAAAAA322890.274053292242456No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCGAAAAAAAA296170.25137465874894915No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAA293650.24923580559013037No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGAGAAAAAAAAAAA289430.24565407530036243No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATGAAAAAAAAAAA284340.24133393142005No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAA275540.2338649203892543No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATAAAAAAAA273590.23220985544493028No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGGTAAAAAAAAAAA273380.23203161768169536No Hit
TGATGATTCATAATAACTTTTCGAATCACAAAAAAAAAAA258020.21899479842794295No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCTAAAAAAAA245680.208521207959759No Hit
TTGATGATTCATAATAACTTTTCGAATCGCGAAAAAAAAA239830.2035560131267869No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGGTAAAAAAAAAAAA236670.20087395916572848No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGAGAAAAAAAAAAAA229950.19517035074221176No Hit
GAATACTGCCAGCTGGGACTGAGGAAAAAAAAAAAAAAAA216910.18410263439657817No Hit
AGTTAAAAAGCTCGTAGTTGAACTTTGGAAAAAAAAAAAA203340.17258507988658986No Hit
GGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAAAA202020.1714647282319705No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATCAAAAAAAAAA199600.1694107501985017No Hit
TTGATGATTCATAATAACTTTTCGAATCGCTAAAAAAAAA197160.1673397971399629No Hit
CAAGACTGTAAATCTTGAGAAAAAAAAAAAAAAAAAAAAA187570.15920027261890263No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATTAAAAAAAAAA185340.15730755732359872No Hit
TTTGATGATTCATAATAACTTTTCGAATCGTAAAAAAAAA179730.15254606279146649No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA179720.1525375752789315No Hit
TTGATGATTCATAATAACTTTTCGAATCGTAAAAAAAAAA176520.14982157126773304No Hit
TTGATGATTCATAATAACTTTTCGAATCGCACAAAAAAAA173380.14715649233174463No Hit
TGATGATTCATAATAACTTTTCGAATCGCATAAAAAAAAA158910.13487506169360675No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATCAAAAAAAAAAA154520.1311490436907439No Hit
AAAGATTGGAAATCTTTTGAAAAAAAAAAAAAAAAAAAAA154080.13077559313920412No Hit
GAATACTGCCAGCTGGGACTGAGAAAAAAAAAAAAAAAAA152620.12953641630909482No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATTAAAAAAAAAAA145180.1232217069830585No Hit
TTGATGATTCATAATAACTTTTCGAATCGCCAAAAAAAAA135340.11486999464862335No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCAAAAA135280.11481906957341338No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAGAAAAAAA128010.10864864796047197No Hit
GGAATACTGCCAGCTGGGACTGAGGAAAAAAAAAAAAAAA126130.10705299560389288No Hit
GCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAAAAA125990.10693417042840295No Hit
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA125030.10611936922504342No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGACAAAAAAAAAAA119520.10144274981826112No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)