FastQCFastQC Report
Mon 25 Sept 2023
SRR387903.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR387903.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32829314
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAT6841922.0840886288394573No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAAA5493361.673309408780214No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAA4439671.352349305867311No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAA4231871.2890522171739562No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAA3608881.099285839478705No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAAAAAAAAAAAAATCGT3097210.9434281812894414No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAATC2815280.8575506634101462No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAT2623130.7990206557468731No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATTAAAAAAAAAAAAAAAAAA2380510.7251171925188568No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATTAAAAAAAAAAAAAAAAAAAA1966660.5990560753112295No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATAAAAAAAAAAAAAAAAAAA1798590.5478609757121334No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAAT1784380.5435325270579824No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAA1739470.5298526798336389No Hit
TTCCAGGGGGCATGCCTGTTTGAGCGTCATTAAAAAAAAAAAAAAAAAAA1651530.5030656443201951No Hit
TGGTCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAT1594490.4856909285402674No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAC1492000.45447187839502223No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAAAAAAAAAAAATCGTA1305290.3975989263741545No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATGAAAAAAAAAAAAAAAAAAAA1214850.370050376319164No Hit
TTCCAGGGGGCATGCCTGTTTGAGCGTCATAAAAAAAAAAAAAAAAAAAA1212560.3693528289991073No Hit
TTTTATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAA1202410.36626107996042806No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAATC1075280.32753654249369935No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAATC1065640.3246001424214956No Hit
TGGTCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAA1029910.3137165765937114No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAT1029560.3136099645578948No Hit
TTGTGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAA858560.2615223699161061No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAA815900.24852788577915458No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAATCG766050.23334328582071498No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATTAAAAAAAAAAAAAAAAAAA756760.23051349778432775No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATTAAAAAAAAAAAAAAAAAAAA754050.2296880160212912No Hit
GGGTCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAT624640.19026897729267203No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAATC620390.1889744025720428No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATTAAAAAAAAAAAAAAAAAAAA603400.18379914974769196No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAAAAAAAAATCG596020.18155115882104633No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAC595700.18145368495972836No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATTAAAAAAAAAAAAAAAAAAAT548340.16702755348466922No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAATCG540920.16476737832535887No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATAAAAAAAAAAAAAAAAAA515050.15688722584943443No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAAAAAAAAAAAAAAAAA497750.15161754522193185No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATGAAAAAAAAAAAAAAAAAAA496750.15131293940531318No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAAAAAAAAAAAAAATCG477470.14544013926090568No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATGAAAAAAAAAAAAAAAAAAAA469590.14303984542595072No Hit
AGATTTGAAATATTTATTATATAGATTTAAAAAAAAAAAAAAAAAAAATC460670.1403227615417124No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATGAAAAAAAAAAAAAAAAAAAT448470.1366065705789649No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGACAAAAAAAAAAAAAAAAAAAAT429770.1309104418081962No Hit
GGGTCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAA428840.13062715839874084No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAT409100.12461423957868872No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAAAAAAAATCGT397570.12110213451307572No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAAAAAAAAAAAAATCGA390030.11880540665577112No Hit
TGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAATC384780.11720622611852323No Hit
CGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAT380910.11602740160820905No Hit
TGGTCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAC360500.10981039689102247No Hit
TTTGCTCGAATATATTAGCATGGAATAAAAAAAAAAAAAAAAAAAATCGT356710.10865594084603779No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTAAAAAAAAAAAAAAAAAA356520.10859806574088024No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCACTAAAAAAAAAAAAAAAAAA356050.10845490100706946No Hit
TGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAAAT352860.10748320845205597No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATAAAAAAAAAAAAAAAAAAA352520.10737964247440565No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAAAAAAAAAAATCGTAT339660.10346241167268984No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGGTAAAAAAAAAAAAAAAAAAAAT330350.10062653151997024No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAAA329490.1003645705176782No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)