FastQCFastQC Report
Mon 25 Sept 2023
SRR387906.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR387906.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35001129
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length49
%GC28

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAA10945513.1271876972882793No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAA5961841.7033279126510463No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAA5503251.5723064247441847No Hit
AATACTGCCAGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAAA5126421.4646441833347719No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAA4819741.3770241525637645No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAA3138290.8966253631418576No Hit
AATACTGCCAGCTGGGACTGAGGACTGCGACAAAAAAAAAAAAAAAAAA2951360.8432185144656333No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAA2415090.6900034567456381No Hit
TTTGCTCGAATATATTAGCATGGAATAATAAAAAAAAAAAAAAAAAAAA2186380.6246598502579731No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCAAAAAAAAAAAAAA2123210.6066118610059692No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAAAAAAAAAAAAAAAAA2092300.5977807173020048No Hit
ACTGCCAGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAAAAAA2032960.5808269784668946No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATAAAAAAAAAAAAAAAAA1941760.5547706761116191No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAATCG1451080.41458091251856477No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGACAAAAAAAAAAAAAAAAAAAA1371000.3917016505381869No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAT1360270.38863603514046646No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAAAAAAAAAAAAAAAAAAA1254610.35844843747754535No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCAAAAAAAAAAAAAA1238230.3537685884361044No Hit
TTTGCTCGAATATATTAGCATGGAATAAAAAAAAAAAAAAAAAAAATCG1231030.35171151193437217No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATAAAAAAAAAAAAAAA1217050.34771735506017537No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAATAAAAAAAAAAAAAAA1169690.33418636295989196No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCAAAAAAAAAAAAAAAAAAAA1119770.31992396588121486No Hit
GAATACTGCCAGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAA1073100.30659011027901417No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCAAAAAAAAAAAAAAAAAAAA1053640.3010302896229433No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTAAAAAAAAAAAAAAAAA1051860.3005217345989039No Hit
TGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAAA1024840.2928019836160142No Hit
AATACTGCCAGCTGGGACTGAGGACTGCGACCAAAAAAAAAAAAAAAAA989050.28257659917198674No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAT975190.2786167269061521No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAT904660.25846594834126635No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGACAAAAAAAAAAAAAAAAAAA898890.2568174300891837No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGGTAAAAAAAAAAAAAAAAAAAA886410.25325183081951447No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATAAAAAAAAAAAAAAAA865640.2473177365221562No Hit
ACTGCCAGCTGGGACTGAGGACTGCGACAAAAAAAAAAAAAAAAAAAAT834190.23833231208056174No Hit
ACTGCCAGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAAAAAT789140.22546129869125078No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAATAAAAAAAAAAAAAAAA751710.21476735793293983No Hit
TTTGCTCGAATATATTAGCATGGAAAAAAAAAAAAAAAAAAAATCGTAT747360.2135245408798099No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAAAAAAAAATC740130.2114588932259871No Hit
AAATACTGCCAGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAA715040.20429055302758947No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAATCGT714760.20421055560807766No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCAAAAAAAAAAAAAAA710740.20306202122794384No Hit
TTGCTCGAATATATTAGCATGGAATAATAAAAAAAAAAAAAAAAAAAAT694300.1983650298823218No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATTAAAAAAAAAAAAAAAAA693860.19823931965166036No Hit
AGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAAAAAATCGTAT682510.1949965671107352No Hit
ATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAAATCGTATGCC677670.1936137545734596No Hit
GAATACTGCCAGCTGGGACTGAGGACTGCGACAAAAAAAAAAAAAAAAA676850.1933794764163179No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGACAAAAAAAAAAAAAAAAAAAA670260.19149668000709347No Hit
TGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCAAAAAAAAAAAAAAA661490.1889910465459557No Hit
TTTGCTCGAATATATTAGCATGGAATAATAAAAAAAAAAAAAAAAAAAT661330.1889453337348061No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAT659160.18832535373358958No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATTAAAAAAAAAAAAAAAAAAA654240.18691968479073917No Hit
TTTCCTTGTCTATGTTCCTTGGAACAGGACGTCAAAAAAAAAAAAAAAA644750.18420834367942818No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGGTAAAAAAAAAAAAAAAAAAA589670.1684717084411763No Hit
AATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAAATCGTATGCCGT553010.1579977605865228No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATAAAAAAAAAAAAAAAAAA544170.15547212777050706No Hit
TTCCAGGGGGCATGCCTGTTTGAGCGTCATTAAAAAAAAAAAAAAAAAA542670.1550435701659795No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAAC530870.15167225034369605No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCAAAAAAAAAAAAAAAAAAAATCG514010.14685526286880632No Hit
TTTGCTCGAATATATTAGCATGGAATAAAAAAAAAAAAAAAAAAATCGT512770.14650098858239685No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAAA505040.14429248839373152No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAAA502570.1435867968716095No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCACTAAAAAAAAAAAAAAAAA498610.14245540479565671No Hit
TTGCTCGAATATATTAGCATGGAATAAAAAAAAAAAAAAAAAAAATCGT490630.14017547833957011No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATGAAAAAAAAAAAAAAAAAAA486430.13897551704689295No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGCCAAAAAAAAAAAAAAAAAAAA474510.13556991261624732No Hit
ACTGCCAGCTGGGACTGAGGACTGCGACAAAAAAAAAAAAAAAAAAAAA469550.13415281547060953No Hit
TTGATGATTCATAATAACTTTTCGAATCACAAAAAAAAAAAAAAAAAAA456740.1304929335279442No Hit
TTGATGATTCATAATAACTTTTCGAATCGCACAAAAAAAAAAAAAAAAA450610.12874156145077492No Hit
TACTGCCAGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAAAAA444490.12699304642430248No Hit
AGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAAAAATCGTATG433610.12388457526612928No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAAAAAAAATCG429890.12282175240690094No Hit
ACTGCCAGCTGGGACTGAGGACTGCGACCAAAAAAAAAAAAAAAAAAAA425600.12159607765795212No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGAAAAAAAAAAAAAAAAAAAAT415580.11873331285970803No Hit
AGTTTTGGTGGCAGGATAAATCCAAAAAAAAAAAAAAAAAAAATCGTAT409970.11713050741877498No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCAAAAAAAAAAAAAAAAAAAATCG397410.11354205174353091No Hit
GGGGCCAGCATCAGTTTTGGTGGCAGGGTAAAAAAAAAAAAAAAAAAAA394910.11282778906931831No Hit
GGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAATC391340.11180782197054273No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAACAAAAAAAAAAAAAAA373750.1067822697947829No Hit
ATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAATCGTATGCCG370550.10586801357179078No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGACAAAAAAAAAAAAAAAAAAAT368800.10536802969984198No Hit
AATACTGCCAGCTGGGACTGAGGACTGCGATGAAAAAAAAAAAAAAAAA362910.10368522683939708No Hit
TTTGCTCGAATATATTAGCATGGAAAAAAAAAAAAAAAAAAATCGTATG360710.10305667568609No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGCCAAAAAAAAAAAAAAAAAAAA360640.10303667633121205No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGAGAAAAAAAAAAAAAAAAAAAA356550.10186814259620025No Hit
ACTGCCAGCTGGGACTGAGGACTGCGACAAAAAAAAAAAAAAAAAAATC352230.10063389669516089No Hit
TGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAATC350480.10013391282321209No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)