FastQCFastQC Report
Tue 27 Jun 2023
SRR389609.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR389609.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22574685
Total Bases902.9 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGCTCCACACAATATAGATGGATACGAATAAGGCGTCC668020.29591553547701777No Hit
CTGTAGGCACCATCAATTCGTATGCCGTCTTCTGCTTGAA288450.127775869297844Illumina Single End Adapter 1 (95% over 22bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)