FastQCFastQC Report
Mon 3 Jul 2023
SRR3945923.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3945923.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28428350
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length45
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAGGTGCACAATCGACCGATCCTGAGGATCTGTAGGCACCATC1601760.5634375544131123No Hit
AAGAGGTGCACAATCGACCGATCCTGATGGACTGTAGGCACCATC1131970.3981835034393484No Hit
AAGAGGTGCACAATCGACCGATCCTGATGGTCTGTAGGCACCATC1013630.3565560435269722No Hit
AAGAGGTGCACAATCGACCGATCCTGATGGGCTGTAGGCACCATC957870.3369418204011137No Hit
AAGAGGTGCACAATCGACCGATCCTGACGATCTGTAGGCACCATC942490.3315317280109468No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGGAAACTGTAGGCACCA836900.29438922765478825No Hit
AAGAGGTGCACAATCGACCGATCCTGATGAGCTGTAGGCACCATC719640.25314167019893874No Hit
AAGAGGTGCACAATCGACCGATCCTGATTGACTGTAGGCACCATC671010.23603550680922392No Hit
AAGAGGTGCACAATCGACCGATCCTGATGTGCTGTAGGCACCATC615750.21659716445027585No Hit
AAGAGGTGCACAATCGACCGATCCTGAGGGTCTGTAGGCACCATC576520.20279755947847836No Hit
AAGAGGTGCACAATCGACCGATCCTGATTGTCTGTAGGCACCATC490760.17263049033799008No Hit
AAGAGGTGCACAATCGACCGATCCTGAGTCACTGTAGGCACCATC475790.16736462017668982No Hit
AAGAGGTGCACAATCGACCGATCCTGAAGATCTGTAGGCACCATC453190.1594148095123354No Hit
AAGAGGTGCACAATCGACCGATCCTGATCGACTGTAGGCACCATC445370.15666403431785525No Hit
AAGAGGTGCACAATCGACCGATCCTGATGAACTGTAGGCACCATC404860.14241417458276687No Hit
AAGAGGTGCACAATCGACCGATCCTGATGTACTGTAGGCACCATC396330.13941364869927378No Hit
AAGAGGTGCACAATCGACCGATCCTGATGGCCTGTAGGCACCATC394190.13866087901689686No Hit
AAGAGGTGCACAATCGACCGATCCTGATTGGCTGTAGGCACCATC375990.1322588191013548No Hit
AAGAGGTGCACAATCGACCGATCCTGAGGAACTGTAGGCACCATC369100.12983518213332818No Hit
AAGAGGTGCACAATCGACCGATCCTGAGAAACTGTAGGCACCATC344300.12111149609456758No Hit
AAGAGGTGCACAATCGACCGATCCTGACGGTCTGTAGGCACCATC330340.11620090508242653No Hit
AAGAGGTGCACAATCGACCGATCCTGAGGTACTGTAGGCACCATC327710.1152757722484773No Hit
AAGAGGTGCACAATCGACCGATCCTGACGAACTGTAGGCACCATC322010.11327073150569765No Hit
GTTTCTTTACTTATTCAATGAAGCGGAGGAAACTGTAGGCACCAT320460.11272550112827512No Hit
AAGAGGTGCACAATCGACCGATCCTGAGAATCTGTAGGCACCATC316430.11130790214697653No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGAAAACTGTAGGCACCA298200.10489528938541982No Hit
AAGAGGTGCACAATCGACCGATCCTGAGGGACTGTAGGCACCATC297630.10469478531114186No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGAACACTGTAGGCACCA296580.10432543570062983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)