FastQCFastQC Report
Sun 2 Jul 2023
SRR3945931.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3945931.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24559108
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length45
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAGTTTCTTTACTTATTCAATGAAGCGGAGAACACTGTAGGCA308020.12541986459768817No Hit
AACAGTTTCTTTACTTATTCAATGAAGCGGAGAACACTGTAGGCA283140.11528920350038771No Hit
CACAGTTTCTTTACTTATTCAATGAAGCGGAGAATACTGTAGGCA247230.10066733694073905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)