FastQCFastQC Report
Sun 2 Jul 2023
SRR4045279.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4045279.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18469910
Total Bases497.4 Mbp
Sequences flagged as poor quality0
Sequence length3-34
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC7928864.292852536910034No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC7380843.996142915693688No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC5441862.9463381250910263No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT5211882.821822087925713No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGC4401992.383330508919643No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC4284352.3196377242769453No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC3536111.9145247594601165No Hit
TCGGCCGAGGTGGGATCCCGAGGC3387181.8338909068858484No Hit
CCCCCCGCGGGGGCGCGCCGGC3346671.8119579359076468No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2525481.3673482978531029No Hit
TCGGCCGAGGTGGGATCCCGAGGCC1816480.9834806991479655No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1608580.870919241079139No Hit
TGCCGGCCGAGGTGGGATCCCGAGGCC1608090.8706539447133201No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT1350620.731254240004418No Hit
CCGGCCGAGGTGGGATCCCGAGGCC1259990.6821852407510378No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC1251630.6776589598974765No Hit
CCGGCCGAGGTGGGATCCCGAGGC1174830.6360778152140427No Hit
TGCCGGCCGAGGTGGGATCCCGAGGC1157320.6265975307946817No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC1120480.6066515754543471No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT1097770.5943559010303786No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC1054990.5711939040309346No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTT1050000.5684922124688209No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC952420.5156603361900518No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT942420.5102461246427297No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG933830.50559531692358No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTT854550.4626714477764104No Hit
TGGGGCTACGCCTGTCTGAGCGTCGCT812720.440023800873962No Hit
TTCCCCCGCGGGGGCGCGCCGGC802740.4346204177497346No Hit
CCCCCGCGGGGGCGCGCCGGC800480.43339680594003976No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC751450.40685092672351947No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC748310.4051508642976604No Hit
CCCCCCGCGGGGGCGCGCCGGCG713270.3861794670358437No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC687390.3721674875513741No Hit
TCGCGGCGCCTCGCCTCGGCCGG684130.3704024545869471No Hit
TCCCCCGCGGGGGCGCGCCGGC680030.368182627852545No Hit
TCGGCGGATCTTTCCCG679290.3677819761980432No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC663680.3593303919726734No Hit
TCCCCGCGGGGGCGCGCCGGC648400.35105747672836524No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCC644510.3489513484364569No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC633060.3427520762147731No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC620930.33618463760787143No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT603390.3266881105538684No Hit
GCCGGCCGAGGTGGGATCCCGAGGCC590710.319822890311864No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCT586680.3176409630582932No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC563610.3051503770186211No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCC551090.29837178416137383No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC540630.2927085188828749No Hit
ATGCGTGCATTTATCAGA533750.28898354133831733No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC517450.28015837651618225No Hit
TCCCTGGTGGTCTAGTGGTTAGGATT515360.279026806302792No Hit
TCCCCGCCCCTTGCCTCTCGGC513460.27799810610880077No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGC510940.27663372479887555No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG510110.2761843452404478No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGT502470.27204788761829374No Hit
CGCGCCGTCGGGCCCGGGGG485750.2629953259111712No Hit
GGGTCGCGCCGTCGGGCCCGGGGG481630.2607646707536745No Hit
CCGCCGGCCGAGGTGGGATCCCGAGGCC461410.24981713500498917No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC457970.2479546462327104No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT429710.23265408439997812No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG420840.22785167875750342No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCT412170.22315755734597514No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC410630.22232376876768753No Hit
CCGCGAGGGGGGCCCGGGC407530.22064536318801767No Hit
TGCGCGCGGGTCGGGGGGCGGGGCGGACTGT406550.22011477045638014No Hit
CCGCCGGCCGAGGTGGGATCCCGAGGC406460.22006604255245424No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC404840.21918894028178804No Hit
CGCGGCGCCTCGCCTCGGCCGG395170.21395339771552757No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCT379060.2052311029127917No Hit
TCGCCGTCGGGCCCGGGGG377100.20416991744951654No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGGT376030.20359059681395306No Hit
TCGCGGCGCCTCGCCTCGGCCGGCG375070.20307083250541016No Hit
TCGCCGGCCGAGGTGGGATCCCG347040.1878947975382663No Hit
GCCGGCCGAGGTGGGATCCCGAGGC339570.18385038151241667No Hit
GGGGGCTACGCCTGTCTGAGCGTCGCT336310.1820853485479897No Hit
TCCCCGCCCCTTGCCTCTCGGCG333540.18058561194938147No Hit
TCTCCCCCGCGGGGGCGCGCCGGC331100.17926454433183486No Hit
CCCCCGCCCCTTGCCTCTCGGC329810.1785661110422303No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG325010.1759672894995157No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC320210.17336846795680108No Hit
TCGGGTCGCGCCGTCGGGCCCGGGGG317470.17188497399283484No Hit
CCCCCCCGCGGGGGCGCGCCGGC313680.16983298781639977No Hit
TCGCTTCTGGCGCCAAGCGCCCGG312900.16941067931570863No Hit
CGGCCGAGGTGGGATCCCGAGGC309420.16752653369724055No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGG302250.1636445440178106No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT293960.15915616264508056No Hit
ACCCCCGCGGGGAATCCCCC289650.15682263746818476No Hit
TCGCCCCAGCTGCGGCGGGCGTCGCG289470.15672518166033295No Hit
TCCCCCGCGGGGGCGCGCCGGCG288180.15602674837072839No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG285840.15475982286865503No Hit
TCGTTTCCCGGTCAGGG273790.14823569795413188No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC272290.14742356622203356No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCG269560.14594548646961464No Hit
GCGCCGGCCGAGGTGGGATCCCGAGGCC268690.14547445006499762No Hit
TCGGCCGAGGTGGGATCCCGAGGCCT267890.14504131314121183No Hit
ACCCCCCCCGCGGGGGCGCGCCGGC264830.14338456440773129No Hit
TCGCGCCGTCGGGCCCGGGGG264700.1433141796576161No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGT261730.14170615882806142No Hit
TCCCCCCCGCGGGGGCGCGCCGGC260940.141278436115823No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC252810.13687668212785012No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCC252560.13674132683916704No Hit
GTCTAGGGGTATGATTCTCGCTT246650.1335415278146997No Hit
TGCCGGCCGAGGTGGGATCCCGAGGCCT244660.13246409971678258No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGC244270.13225294546643704No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG238460.1291072885574429No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGG233690.12652470964937024No Hit
GCGCCGGCCGAGGTGGGATCCCGAGGC231670.12543103891681118No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCC230000.12452686558840839No Hit
TTGCGTGCATTTATCAGA227250.12303795741289482No Hit
GCGCCGTCGGGCCCGGGGG226620.12269686208541351No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCC226430.12259399206601439No Hit
ACCGCCCGTCCCCGCCCCTT223770.12115381179442673No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA222580.12050952062029538No Hit
CCCCCGCCCCTTGCCTCTCGGCG222550.12049327798565343No Hit
TTCCCCCGCGGGGGCGCGCCGGCG220230.1192371809066747No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCG216930.11745049109605839No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA215990.11694155521061013No Hit
CCCCGCGGGGGCGCGCCGGC210180.11379589830161599No Hit
CGCGGCGCCTCGCCTCGGCCGGCG209980.11368761407066955No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG204710.11083432458523078No Hit
TATGCGTGCATTTATCAGA201840.10928044587114935No Hit
ACCCCCCCGCGGGGGCGCGCCGGC197820.10710393282912585No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCC195860.10604274736585072No Hit
CGGCCGAGGTGGGATCCCGAGGCC195090.10562585307670692No Hit
CGCTTCTGGCGCCAAGCGCCCGGC194120.10510067455661669No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTT192480.10421274386285585No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC191030.10342768318849416No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCC190260.10301078889935035No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCC188300.10194960343607523No Hit
CCCCGCCCCTTGCCTCTCGGC186690.10107791537695636No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCT186410.10092631745363134No Hit
ACGATGCCGACCGGCGATGCGGCGGCG184960.10014125677926962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)