FastQCFastQC Report
Sun 2 Jul 2023
SRR4045281.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4045281.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10661522
Total Bases292.9 Mbp
Sequences flagged as poor quality0
Sequence length3-35
%GC73

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC6047435.67220139863708No Hit
CCCCCCGCGGGGGCGCGCCGGC1783461.6728005626213591No Hit
ACGATGCCGACCGGCGATGCGGCGGCG1728921.6216446394801793No Hit
TTCCCCCGCGGGGGCGCGCCGGC1685791.5811907530650877No Hit
TCCCCCGCGGGGGCGCGCCGGC1569291.4719193000774187No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG1348791.2651007989290837No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC1289691.2096678129070126No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1117171.0478522672466464No Hit
TGCGCGCGGGTCGGGGGGCGGGGCGGACTGT1040740.9761645663724184No Hit
TCCCCCGCGGGGGCGCGCCGGCG980780.9199249412982499No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG959470.899937175949175No Hit
CCCCCCGCGGGGGCGCGCCGGCG893350.8379197641762592No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC847840.7952335510821062No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC846110.7936108934540491No Hit
TTCCCCCGCGGGGGCGCGCCGGCG831910.7802919695705736No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG779610.7312370597743925No Hit
TCGCCCCAGCTGCGGCGGGCGTCGCG729790.6845082718958888No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC720180.6754945494648887No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT681150.6388862678330542No Hit
TCTCCCCCGCGGGGGCGCGCCGGC676700.6347123797146411No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG628400.5894092794631011No Hit
TAACGATGCCGACCGGCGATGCGGCGGCG575320.539622766805715No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCG549440.5153485590518877No Hit
AACGATGCCGACCGGCGATGCGGCGGCG546680.5127598104660854No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCG537530.5041775461327191No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG480780.4509487482181249No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC471400.44215075483594185No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGG441770.4143592256340136No Hit
TCACCCCCGCGGGGAATCCCCC440480.4131492670558669No Hit
GCGCGCGGGTCGGGGGGCGGGGCGGACTGT426530.40006483126893133No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC411240.3857235392845412No Hit
TCCCCGCCCCTTGCCTCTCGGC403400.37836999257704484No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC396410.3718137053977847No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC393440.3690279868108887No Hit
TTACCCTACGCCGGCAGGCGCGGGT387780.3637191763052217No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC387520.3634753086848201No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC376530.3531672119609189No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCG368910.3460200147783778No Hit
AGGGGCCCGGGGCGGGGTCCGCCGG343550.3222335422653539No Hit
TCCCCCCCGCGGGGGCGCGCCGGC337150.3162306469939283No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGG332700.31205675887551515No Hit
TCTCCCCCGCGGGGGCGCGCCGGCG329090.30867075076147665No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT321920.30194563215270764No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCC316340.2967118578379334No Hit
CCGCGAGGGGGGCCCGGGC309740.2905213720892758No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGC306940.2878951054080271No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA289840.27185611960468686No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC280870.2634426867008294No Hit
CCCCCGCCCCTTGCCTCTCGGC276340.2591937623915235No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCC275880.25876230429388974No Hit
TCGATGCCGACCGGCGATGCGGCGGCG271540.25469159093795424No Hit
TCGCGGCGCCTCGCCTCGGCCGGCG264200.247807020423538No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAG260440.2442803194515755No Hit
TCGCTTCTGGCGCCAAGCGCCCGG258320.24229186039291575No Hit
TCCCCGCCCCTTGCCTCTCGGCG248480.2330624089130989No Hit
ACCCCCGCGGGGAATCCCCC241360.22638418792363793No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC237880.22312011361980025No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC227340.21323409546967123No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCT224540.21060782878842252No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCTC224200.21028892497712803No Hit
TCTCGCTTCTGGCGCCAAGCGCCCG223310.2094541473534454No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC218020.2044923792306577No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT212130.1989678396761738No Hit
CGCGCGGGTCGGGGGGCGGGGCGGACTGT211030.19793609205139753No Hit
CGCGGCGCCTCGCCTCGGCCGGCG208580.19563810870530493No Hit
ACCCCTCCTCCCCGCGC207220.194362493460127No Hit
TCACCCCCGCGGGGAATCCCCCGCGAGGGGGG204470.1917831243981863No Hit
TCGGCGGATCTTTCCCG204360.19167994963570867No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTA201140.18865974295227267No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCC198670.18634300055845684No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGG196070.1839043243544402No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG194450.1823848414888606No Hit
TCGCTTCTGGCGCCAAGCGCCCG179500.16836245331576485No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA178410.1673400852148502No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC177810.16677731378315405No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCG169530.15901106802574716No Hit
TCCCCCCCGCGGGGGCGCGCCGGCG168780.15830760373612698No Hit
AGGGGCCCGGGGCGGGGTCCGCCGGC167100.15673184372737775No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT166760.15641293991608327No Hit
TCGCGCGGGTCGGGGGGCGGGGCGGACTGT165920.15562505991170866No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGC160710.15073832797981376No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC153140.14363802841658066No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCG151650.1422404793612019No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTC148960.1397173874424308No Hit
CTCGCTTCTGGCGCCAAGCGCCCG146190.13711925933276695No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGC145940.13688477123622686No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTATT145250.1362375840897763No Hit
CCCCGCCCCTTGCCTCTCGGC144870.1358811621830354No Hit
TCGGGTCGCGCCGTCGGGCCCGGGGG144330.1353746678945089No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG142270.13344248597901875No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC138700.13009399596042664No Hit
CCCCCCCGCGGGGGCGCGCCGGC137650.1291091459549584No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGA136810.1283212659505838No Hit
CCCCCGCCCCTTGCCTCTCGGCG135600.1271863435633299No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGT135560.12714882546788348No Hit
TTTGGTGCAATTTTTGGAAAAATG135270.126876819275897No Hit
TCCCCGCGGGGGCGCGCCGGC135060.12667984927480336No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC134840.1264734997498481No Hit
TCCCTGGTGGTCTAGTGGTTAGGATT134800.1264359816544017No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTA134550.12620149355786162No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC132680.12444752259574196No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC131340.12319066639828723No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC130750.12263727449045268No Hit
TCCCCGCGAGGGGCCCGGGGCGGGG126640.11878229018333405No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCG124220.11651244540882624No Hit
ACCCCTCCTCCCCGCG122950.11532124587840273No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG121200.11367982920262229No Hit
GGGTCGCGCCGTCGGGCCCGGGGG120370.11290132872210927No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG120070.11261994300626121No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGC119540.11212282824159628No Hit
CCCCCGCGGGGGCGCGCCGGC118700.11133494823722166No Hit
ACCCCCGCGGGGAATCCCCCG118530.11117549633157442No Hit
CGTGGATCGCCCCAGCTGCGGCGGGCGTCGCG117900.11058458632829346No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCC117290.11001243537273571No Hit
TTCTCCCCCGCGGGGGCGCGCCGGC116420.10919641679677629No Hit
AGGGGCCCGGGGCGGGG115800.10861488631735694No Hit
ACCCCCCCGCGGGGGCGCGCCGGC114540.10743306631079504No Hit
CTCCCCCGCGGGGGCGCGCCGGC113720.10666394535414363No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC112140.10518198058401043No Hit
AAACGATGCCGACCGGCGATGCGGCGGCG111660.10473176343865351No Hit
CGGGGGGCGGGGCGGACTGT111610.1046848658193455No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTATT110810.1039345039104173No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCT110210.10337173247872114No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCG108270.10155210484957027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)