FastQCFastQC Report
Tue 4 Jul 2023
SRR4045284_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4045284_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43712153
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length3-36
%GC69

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC8464871.9365026472157525No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC6873761.572505476909362No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG6585811.506631348037238No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG4242350.9705195715251087No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG4222540.9659876510772645No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC3798930.8690786747566518No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC3643910.8336148530592854No Hit
CCGCGAGGGGGGCCCGGGC3281920.7508026429171768No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG3266140.7471926628734119No Hit
CCCCCCGCGGGGGCGCGCCGGC3146870.7199073447606207No Hit
TCGGGTCGCGCCGTCGGGCCCGGGGG3140740.7185049887613635No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGG2889630.6610587220446451No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC2839750.6496477078125161No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT2837650.6491672922173383No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG2561090.5858988460257265No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG2449660.560407079468266No Hit
TCGCCCCAGCTGCGGCGGGCGTCGCG2377140.5438167275814577No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC2346560.5368209614383441No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC2254500.5157604568230717No Hit
TCACCCCCGCGGGGAATCCCCCGCGAGGGGGG2043680.4675313064538367No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC1966980.44998469876329356No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC1910840.4371415885188725No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGGT1711780.3916027654826336No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCG1633300.37364894838284446No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCG1524340.3487222420730455No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC1504160.3441056769727174No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCT1492760.34149770659889483No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC1492330.34139933578654885No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCC1481490.33891947623810703No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC1421020.32508579479029553No Hit
GGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC1420090.32487303931243106No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGG1389260.3178200808365582No Hit
TCCCCGCCCCTTGCCTCTCGGC1353660.30967589265163853No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCC1288330.2947303922549869No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC1265540.289516739200652No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG1259880.28822190478698223No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCC1256770.287510432167457No Hit
TCCCCCGCGGGGGCGCGCCGGC1246400.28513809420460257No Hit
CCCCCGCCCCTTGCCTCTCGGC1117610.25567489206033844No Hit
GGGTCGCGCCGTCGGGCCCGGGGG1106140.2530509078333433No Hit
AAATGGATTTTTGGAGCAGGGA1078210.24666138041747795No Hit
CGGGTCGCGCCGTCGGGCCCGGGGG1076890.24635940490050903No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGG1068870.2445246748655917No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGC1057470.24191670449176914No Hit
ACCCCCGCGGGGAATCCCCC1046160.2393293233577399No Hit
AAATGGATTTTTGGAAATAGGA981280.2244867691600549No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCG974820.22300891928155542No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC974500.22293571309562354No Hit
AACGATGCCGACCGGCGATGCGGCGGCG950250.21738805681797463No Hit
AAATGGATTTTTGGAAATAGGAG945850.21638147176141154No Hit
ACCCCTCCTCCCCGCGC939920.2150248696283617No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC933860.21363852748227707No Hit
TCGCGGCGCCTCGCCTCGGCCGGCG892620.20420408027030834No Hit
TCACCCCCGCGGGGAATCCCCC845770.19348623711122168No Hit
TGGGGTCTCCCCCGCGGGGGCGCGCCGGC840660.19231722582962227No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC813980.18621366007755324No Hit
CCCCGCCCCTTGCCTCTCGGC810980.18552735208444204No Hit
TCTCCCCCGCGGGGGCGCGCCGGC801460.18334946805296917No Hit
CGCGGCGCCTCGCCTCGGCCGGCG796950.18231771836999197No Hit
ACCCCTCCTCCCCGCG795970.18209352442557566No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGC784280.1794192109457523No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC775030.17730309463365942No Hit
CCGCGCGGGGGGCCCGGGC758880.17360846993741075No Hit
TTCCCGTGGATCGCCCCAGCTGCGGCGGGCG749440.17144888745242085No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCC745900.1706390440205496No Hit
TCCGCGAGGGGGGCCCGGGC740880.16949062197874354No Hit
TCACCCCCGCGGGGAATCCCCCGCGAGGGGGGT734350.16799675824707147No Hit
TTCCCCCGCGGGGGCGCGCCGGC715770.16374622407640274No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGC697880.15965354074414959No Hit
AAATGGATTTTTGGAGCAGGGAG691060.15809333390647676No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTC687580.15729721663446775No Hit
TAACGATGCCGACCGGCGATGCGGCGGCG685960.1569266103181877No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGGCCG683340.1563272346708706No Hit
TCGACCTGGTATTGCAGTACCTCCAGG661830.15140640636026323No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCT653110.14941153779362No Hit
TTGGTGCAATTTTTGGAAAAATG650390.14878928521319917No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC643580.14723136606883674No Hit
TAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC641380.14672807354055517No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGG631650.1445021479495645No Hit
CTCTCGCTTCTGGCGCCAAGCGCCCGGCCG624560.1428801733925117No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC621420.1421618376930553No Hit
CTCGCTTCTGGCGCCAAGCGCCCG615620.14083497557304028No Hit
TCTCGCTTCTGGCGCCAAGCGCCCG596330.13642201517733524No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG592670.13558471942573957No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC587900.13449348971669275No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCC582790.13332447843509332No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC574680.13146915916038268No Hit
TCCCTGGTGGTCTAGTGGTTAGGATT570250.13045571102388848No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC565310.12932559052856535No Hit
TCGCTTCTGGCGCCAAGCGCCCGG564740.12919519200987423No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCGC557580.1275572035996488No Hit
CGCGCGTCCGCTGGGGGCGGGGAGCGGT552190.126324136905359No Hit
ACGATGCCGACCGGCGATGCGGCGGCG551710.12621432762646123No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC549270.12565613045873078No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG546920.12511852253079367No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC539890.12351027413360308No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG532360.12178764107089395No Hit
TCCCCGCCCCTTGCCTCTCGGCG527910.120769617547779No Hit
CCCCCGCGGGGGCGCGCCGGC507920.11619651862034798No Hit
TCCCCGCGGGGGCGCGCCGGC500370.11446931017101811No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC488500.11175381821160811No Hit
CGGGGGGCGGGGCGGACTGT487120.11143811653477695No Hit
TTTGGTGCAATTTTTGGAAAAATG483060.11050931305076644No Hit
TCACCTCTAGCATCACCAGTATTAGAGGC482590.11040179146517903No Hit
ACCTCTAGCATCACCAGTATTAGAGGC477860.1093197125293737No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCC477420.10921905402371739No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTC470150.10755590098707789No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCTC464720.1063136835195466No Hit
AAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC462240.10574633557857469No Hit
TCGCCCCAGCTGCGGCGGGCGTCGCGG461320.10553586779402059No Hit
ACCCCCCTCGCGG456880.10452013196421599No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGC454970.10408318254193519No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGG454490.1039733732630374No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCG452850.10359819156013661No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCC450840.10313836520475209No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCG449610.1028569789275765No Hit
TCACCTCTAGCATCACCAGTATTAGAGGCA440550.10078432878838067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)