FastQCFastQC Report
Sun 2 Jul 2023
SRR4045288_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4045288_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21735707
Total Bases592 Mbp
Sequences flagged as poor quality0
Sequence length3-36
%GC68

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC13821436.358859180426014No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGGT7564003.479988021553658No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC4333331.9936457553462603No Hit
CCGCGAGGGGGGCCCGGGC2751161.2657329250895772No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGG2485531.1435238798535516No Hit
TCACCCCCGCGGGGAATCCCCCGCGAGGGGGG1812340.8338077063699838No Hit
TCGGGTCGCGCCGTCGGGCCCGGGGG1662580.7649072560648706No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC1644620.7566443548397114No Hit
TCCCTGGTGGTCTAGTGGTTAGGATT1575490.7248395462820695No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC1476480.6792877728798976No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC1466100.6745122208355128No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1451740.6679055804349957No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC1264490.5817570139310398No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCT1167670.537212799197192No Hit
TCACCCCCGCGGGGAATCCCCC1165820.5363616651623064No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG1103220.5075611297115847No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC997640.458986680304441No Hit
CCCCCCGCGGGGGCGCGCCGGC994710.4576386680221628No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG969480.4460310400761291No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG957860.4406849981921453No Hit
ACCCCCGCGGGGAATCCCCC955800.43973724894248895No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTT906930.4172535082479719No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGG850980.39151245459832523No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC823350.3788006527691968No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC778290.3580697881140926No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCC741720.3412449385704362No Hit
GGGTCGCGCCGTCGGGCCCGGGGG720350.3314131902863799No Hit
TCGCCCCAGCTGCGGCGGGCGTCGCG686570.31587194288182113No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG680890.31325873135849686No Hit
TCCCCCGCGGGGGCGCGCCGGC679390.31256862268156266No Hit
TCCGCGAGGGGGGCCCGGGC673970.3100750299955736No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGGTC661810.3044805489878935No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG658270.30285189251032874No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCG647570.29792911728153126No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT623240.2867355545416581No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC622800.2865331226630907No Hit
CCGCGCGGGGGGCCCGGGC596690.2745206309599223No Hit
GGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC587090.27010393542754324No Hit
ACCCCCCTCGCGG539220.24808026718431564No Hit
TACCCCCGCGGGGAATCCCCCGCGAGGGGGGT486200.2236872258169472No Hit
CGGGTCGCGCCGTCGGGCCCGGGGG484250.22279008453693272No Hit
TCTCCCCCGCGGGGGCGCGCCGGCG475370.21870464116948207No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGC468420.21550713763302015No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG463620.21329878986683068No Hit
TTCCCCCGCGGGGGCGCGCCGGC416670.19169838827878938No Hit
TCCCCCGCGGGGGCGCGCCGGCG416390.1915695679924283No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC409060.18819723692447637No Hit
TCCCCGCGAGGGGCCCGGGGCGGGG405980.18678021377450477No Hit
ACCCCTCCTCCCCGCGC398100.18315484285834363No Hit
TCTCCCCCGCGGGGGCGCGCCGGC386070.17762017126933116No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTC375600.17280321270433024No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCC372880.17155181563682287No Hit
CCCCCCGGGGAGCCCGGCGGGCGCCGGC353730.16274142819462922No Hit
TAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC339470.15618079503924118No Hit
GTGGGGGGCCCAAGTCCTTCTGCTCGAGGCCC333310.15334674873929796No Hit
TCGCGGCGCCTCGCCTCGGCCGGCG329400.1515478654547561No Hit
TTCCCCGCGAGGGGCCCGGGGCGGGG326310.15012624158027157No Hit
TCACCCCCGCGGGGAATCCCC324010.14906807494230576No Hit
CCCGCGAGGGGGGCCCGGGC318710.1466296909504715No Hit
AGGGGCCCGGGGCGGGGTCCGCCGG312390.14372203305832196No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA309030.1421761896219893No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCG302930.13936974766912344No Hit
ACCGCCCGTCCCCGCCCCTT298890.13751105496591393No Hit
TTCCCTGGTGGTCTAGTGGTTAGGATT297510.13687615498313443No Hit
TCCCGCGAGGGGGGCCCGGGC294560.13551894125183045No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTC288930.13292873335107067No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGC287280.13216961380644301No Hit
TCCCCGCCCCTTGCCTCTCGGC285470.13133688266960902No Hit
TTCCCCCGCGGGGGCGCGCCGGCG282920.13016369791882085No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCGC276630.12726984220021No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCTC273560.1258574197747513No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC269050.12378249301943571No Hit
TCCGTAGTGTAGTGGTTATCACGTT266640.12267371841182806No Hit
TGGGGTCTCCCCCGCGGGGGCGCGCCGGC263280.1211278749754954No Hit
CCGCTATTAAAGGTTCGTTTGT263100.12104506193426329No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG258420.11889192286222851No Hit
TCCGCTATTAAAGGTTCGTTTGT256140.11784295767328846No Hit
ACCCCTCCTCCCCGCG255030.11733227725235715No Hit
AAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC242730.1116733861014965No Hit
AGGGGCCCGGGGCGGGGTCCGCCGGC241210.11097407597553649No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCG240910.11083605424014964No Hit
TTTCCGTAGTGTAGTGGTTATCACGTT237950.10947423978433277No Hit
TCGTTTCCCGGTCAGGG235700.10843907676893141No Hit
TCGCCGCGGCCCGGGTTCGCTTCCCGGTCAGG231380.10645156377936085No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCG229030.10537039351883055No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT228750.10524157323246949No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGGCCGC224510.10329086603900207No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTCT222030.10214988635980417No Hit
TCTACTTGGATAACTGTGGT221980.1021268827372397No Hit
TCACCTCTAGCATCACCAGTATTAGAGGC221210.1017726269497468No Hit
TAGTGTAGTGGTTATCACGTT219040.10077426973044862No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT217840.10022218278890123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)