FastQCFastQC Report
Mon 3 Jul 2023
SRR4417736.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4417736.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17593796
Total Bases879.6 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCCGTAGCTCAGCTGGATAGAGTACTCCTGTAGGCACCATCAATTCG1969331.1193320645527547No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCACCTGTAGGCACCATCAATTCG1330300.7561188046058963No Hit
TAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCTGTAGGCACCATCAATTC1205020.6849118859852643No Hit
ACAAGCGGTGGAGCATGTGGTTTAATTCGCTGTAGGCACCATCAATTCGT978910.5563949928713507No Hit
GCGGGAATAGCTCAGTTGGTAGAGCACGACTGTAGGCACCATCAATTCGT925080.5257989805042641No Hit
ACCGGAGTGGACGCATCACTGGTGTTCGGGTCTGTAGGCACCATCAATTC828850.4711035640063122No Hit
GCATCCGCAGCTCAGCTGGATAGAGTACTCCTGTAGGCACCATCAATTCG726920.4131683691228431No Hit
GGGTGATTAGCTCAGCTGGGAGAGCACCTCTGTAGGCACCATCAATTCGT695570.39534958800249814No Hit
GCTGATATGGCTCAGTTGGTAGAGCGCACCTGTAGGCACCATCAATTCGT538620.306142005966194No Hit
GCGCCCGTAGCTCAGCTGGATAGAGCGCTGCTGTAGGCACCATCAATTCG495680.281735675461964No Hit
TGTCCCCTTCGTCTAGAGGCCCAGGACACCGCTGTAGGCACCATCAATTC492330.27983159518275647No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGCTGTAGGCACCATCAATTCGT491140.27915522039700813No Hit
CGGTGATTGGCGCAGCCTGGTAGCGCACTTCTGTAGGCACCATCAATTCG471700.2681058709558756No Hit
GGTGAGGTGTCCGAGTGGCTGAAGGAGCACCTGTAGGCACCATCAATTCG470240.2672760329834449No Hit
ACGCAGGAGGTCTGCGGTTCGATCCCGCATACTGTAGGCACCATCAATTC467550.26574708493834986No Hit
TGCTGATATGGCTCAGTTGGTAGAGCGCACCTGTAGGCACCATCAATTCG461040.26204691699278543No Hit
ACCGCCAGCTAAGGTCCCAAAGTCATGGCTGTAGGCACCATCAATTCGTA449520.2554991543610031No Hit
AGGCACGCTGACACGTAGGTGAAGTGACTGTAGGCACCATCAATTCGTAT409030.23248536018037266No Hit
GTCCCCTTCGTCTAGAGGCCCAGGACACCGCTGTAGGCACCATCAATTCG389870.22159515774765148No Hit
GCATCCGTAGCTCAGCTGGATAGAGTACTCTGTAGGCACCATCAATTCGT366110.20809039731960063No Hit
GCTGATATAGCTCAGTTGGTAGAGCGCACCTGTAGGCACCATCAATTCGT359970.20460053077800835No Hit
GGGGGCTGATTCTGGATTCGACGGGATTTGCGCTGTAGGCACCATCAATT332080.18874835197588968No Hit
TAGGCACGCTGACACGTAGGTGAAGTGACTGTAGGCACCATCAATTCGTA309540.17593701779877408No Hit
TGCGGGAATAGCTCAGTTGGTAGAGCACGACTGTAGGCACCATCAATTCG304790.1732372024775097No Hit
TGGGGCTGATTCTGGATTCGACGGGATTTGCGCTGTAGGCACCATCAATT294200.16721803526652235No Hit
TTGGGGTATCGCCAAGCGGTAAGGCACCGCTGTAGGCACCATCAATTCGT287050.16315410273030334No Hit
ACCGCCAGCTAAGGTCCCAAAGTCATGCTGTAGGCACCATCAATTCGTAT276610.15722019284525068No Hit
GCGCCCTTAGCTCAGTTGGATAGAGCAACGCTGTAGGCACCATCAATTCG273180.15527064199221133No Hit
AGGTCGGGAACTCAAAGGAGACTGCCAGCTGTAGGCACCATCAATTCGTA250690.14248772692374062No Hit
TGGTGAGGTGTCCGAGTGGCTGAAGGAGCACCTGTAGGCACCATCAATTC247900.14090194066135586No Hit
TAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCACTGTAGGCAC241700.1373779711893897No Hit
TGCTGATATAGCTCAGTTGGTAGAGCGCACCTGTAGGCACCATCAATTCG241080.13702557424219308No Hit
TTAGGTTAATGAGGCGAACCGGGGGAACTGCTGTAGGCACCATCAATTCG237010.13471225879849918No Hit
TGCGGGCATCGTATAATGGCTATTACCTCACTGTAGGCACCATCAATTCG233580.13276270794545986No Hit
GGGTGATCAGCTCAGCTGGGAGAGCACCTCTGTAGGCACCATCAATTCGT231210.13141564219569216No Hit
GCATCCGTAGCTCAGCTGGATAGAGTACCTGTAGGCACCATCAATTCGTA223240.12688563627769697No Hit
TTTTGTGCCTTCGGGAACTGTGAGACAGGTGCCTGTAGGCACCATCAATT217970.12389026222652576No Hit
TTAGGTTAATGAGGCGAACCGGGGGAACTGACTGTAGGCACCATCAATTC210770.11979791058166185No Hit
AGGTTAATGAGGCGAACCGGGGGAACTGACTGTAGGCACCATCAATTCGT209120.11886007999638054No Hit
CGCGGGGTGGAGCAGCCTGGTAGCTCGTCGCTGTAGGCACCATCAATTCG208860.11871230063142711No Hit
TGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCTGTAGGCACCATCAATTC204150.11603522059707866No Hit
TTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCTGTAGGCACCATCAAT191990.10912369337464183No Hit
AGGTTAATGAGGCGAACCGGGGGAACTGCTGTAGGCACCATCAATTCGTA187830.10675922353538714No Hit
ATCAGTAGGTCACCAGTTCGATTCCGGTAGCTGTAGGCACCATCAATTCG181610.10322388641996305No Hit
GCGGGCATCGTATAATGGCTATTACCTCACTGTAGGCACCATCAATTCGT181050.10290559240314029No Hit
CAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCTGTAGGCACCATCAATTC178070.10121181352790495No Hit
CGGTGATCGGCGCAGCCTGGTAGCGCACTTCTGTAGGCACCATCAATTCG176610.10038197555547422No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)