FastQCFastQC Report
Mon 3 Jul 2023
SRR4424237.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4424237.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104721382
Total Bases5.3 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG1159970811.076733116451805No Hit
TCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT35214483.362682895074857No Hit
CTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAATA27133102.5909799395122572No Hit
TTCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA26432372.524066193091302No Hit
GGACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGAT24479642.337597110779153No Hit
TCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA17730161.69307926054681No Hit
CTGATGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAGA16968971.620392099103505No Hit
CGAGGGCACGTCTGCCTGGGTGTCACACTGTAGGCACCATCAATAGATCG10632991.0153599768192518No Hit
TATGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT10525311.0050774540007503No Hit
TTCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAAT10170110.9711588794731529No Hit
TGGACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGA9012610.8606274886632034No Hit
TCTTATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT8392100.80137406895566No Hit
TTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG8255820.7883604897421999No Hit
CTGTTGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG7185320.6861368578959357No Hit
TTCGGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA5867550.5603010472111608No Hit
CAGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG5636910.5382768917239844No Hit
CCGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG5565300.5314387466735303No Hit
TTATGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA5159050.4926453319724142No Hit
TATGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA5100730.4870762687222749No Hit
TATTATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT5056590.4828612746917339No Hit
TCTTATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA4299230.41053984562579593No Hit
CTCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA4223580.4033159149866834No Hit
GTCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA4176410.3988115817646486No Hit
CGATGGCACGTCTGCCTGGGTGTCACACTGTAGGCACCATCAATAGATCG4091080.3906632935764732No Hit
CTGGTGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG4018640.3837458905956761No Hit
GCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT3909930.3733650115503632No Hit
CTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATTAATAG3811530.36396864968798825No Hit
CTCATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG3636790.3472824680636854No Hit
CTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCATCATCAATAG2859830.27308940594385966No Hit
CTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACTATCAATAG2818160.26911027587470154No Hit
GATGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT2532950.2418751501961653No Hit
TATTATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA2500240.23875162380878434No Hit
CTGATGATTCATGATAACTCGACGGATCGCACTGTAGGTACCATCAATAG2322030.2217340867407575No Hit
TTCGGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAAT2304760.22008494884072483No Hit
GGGACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGA2303870.21999996142144113No Hit
TGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAGA2253980.21523589136743823No Hit
TTAGGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA2232430.21317804992298517No Hit
TTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAATA2141710.2045150626449907No Hit
GCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA2112460.20172193678651032No Hit
TCCGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT2086960.19928690398680948No Hit
TCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCTGTAGGCACCATCA2051700.19591987431945845No Hit
CTGATGATTCATGATAACTCGACGGATCGCATTGTAGGCACCATCAATAG1888580.18034330371996046No Hit
TGTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT1801290.17200785222639633No Hit
TTATGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAAT1781960.17016200187274075No Hit
CTCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAAT1656070.15814057916080596No Hit
GTCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAAT1651860.15773856002014947No Hit
TCCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA1644570.15704242711388205No Hit
GTCGGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA1571160.1500323973952139No Hit
AGACGTCGCTGCCGTGATCGTGGTCCTGTAGGCACCATCAATAGATCGGA1567460.14967907891055143No Hit
CTGTTGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAATA1539750.14703300993487653No Hit
GGATCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGAT1520090.14515564739204836No Hit
CCGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAATA1361770.13003743590778816No Hit
TTCAGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA1345280.12846278136398162No Hit
CAGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAATA1336930.12766542748643253No Hit
TACTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA1321210.12616430138402873No Hit
TTTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT1310120.1251053008448647No Hit
GATGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA1300720.12420768091085735No Hit
GCACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGAT1288750.12306464786723306No Hit
CCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT1248520.11922302553264623No Hit
TCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATTAAT1247570.11913230862442209No Hit
GAACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGAT1240550.1184619584183868No Hit
TCCGGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA1214880.11601069206668797No Hit
TTGATGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAGA1196440.11424982913231607No Hit
GATTATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT1144190.10926039917998791No Hit
TACGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT1141340.10898824845531546No Hit
TGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAATAG1113930.10637082692434292No Hit
TGTTATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT1106870.10569665705901399No Hit
TTGTTGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG1093600.10442948508834614No Hit
CTGTTGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAGA1089470.10403510526627695No Hit
CCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA1078500.10298756370499389No Hit
GTATGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA1074750.10262947064621435No Hit
CTCGGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA1074210.10257790524575008No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)