FastQCFastQC Report
Tue 4 Jul 2023
SRR4424238.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4424238.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99524632
Total Bases5 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG1269585312.756493287008585No Hit
GGACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGAT33844383.400603380276754No Hit
CTGATGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAGA24203212.4318813859065562No Hit
TTCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA17444551.752787189406538No Hit
CTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAATA17263081.7345535123405431No Hit
TCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT12432981.2492364704247285No Hit
CGAGGGCACGTCTGCCTGGGTGTCACACTGTAGGCACCATCAATAGATCG11022521.1075167803685022No Hit
TCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA11016371.1068988428914763No Hit
TTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG9639150.9685190295403453No Hit
TGGACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGA8960010.900280646101761No Hit
CTCATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG8255860.8295293169232718No Hit
TTATGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA8018010.8056307105963476No Hit
TTCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAAT7361160.7396319737208372No Hit
CTGTTGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG6518370.6549504247350546No Hit
CTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATTAATAG4412580.4433656182722685No Hit
CCGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG4104200.4123803240990632No Hit
CAGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG4085770.41052852122075667No Hit
TTATGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAAT3369250.33853428365351806No Hit
CTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACTATCAATAG3261200.3276776748091869No Hit
CTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCATCATCAATAG3046640.3061191926838775No Hit
CTCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA2907700.2921588295850217No Hit
TTCGGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA2818270.2831731143703199No Hit
GGGACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGA2620130.26326447506985No Hit
CTGATGATTCATGATAACTCGACGGATCGCACTGTAGGTACCATCAATAG2568010.2580275805491047No Hit
TATGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT2374040.23853793300134987No Hit
CGATGGCACGTCTGCCTGGGTGTCACACTGTAGGCACCATCAATAGATCG2334500.23456504717344748No Hit
GTCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA2326470.233758211735965No Hit
TTAGGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA2262200.2273005139069492No Hit
CTGATGATTCATGATAACTCGACGGATCGCATTGTAGGCACCATCAATAG2236210.22468910008127435No Hit
TCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCTGTAGGCACCATCA2229610.2240259476669052No Hit
TATGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA2189710.22001688988912815No Hit
TGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAGA2118670.21287895844719126No Hit
GCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA2077250.20871717465883222No Hit
CTGGTGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG2034180.20438960276688087No Hit
GCTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT2012300.20219115203560864No Hit
CCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA1900330.19094067084819766No Hit
GGATCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGAT1845030.1853842574368926No Hit
TTGATGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAGA1678150.1686165491172075No Hit
CTCATGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAGA1570280.1577780262478137No Hit
GTATGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA1510150.15173630584235667No Hit
TTGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAATA1447350.1454263101419958No Hit
CTGTTGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAGA1299570.13057772471843954No Hit
CTATGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA1290960.12971261225060343No Hit
TCTGATGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAG1272930.1279010004277132No Hit
TCTTATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT1270440.12765081110774668No Hit
TGACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGAT1254960.12609541726313542No Hit
TTCAGATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAA1252350.12583317062654398No Hit
CTCTTGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATAG1234670.12405672597714303No Hit
CTCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAAT1234440.12403361612027865No Hit
TTCGGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAAT1227360.12332223443940994No Hit
CGGACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGA1224420.12302683018210006No Hit
TGAATGATCCGGTGAAGTGTTCGGATCGCGCTGTAGGCACCATCAATAGA1213820.1219617672135678No Hit
CTGATGATTCATGATAACTCGACGGATCGCTGTAGGCACCATCAATAGAT1205860.12116196521078318No Hit
CGGATAACCGTAGTAATTCTAGAGCTAATACGTGCTGTAGGCACCATCAA1178810.11844404508825512No Hit
CTCATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAATA1170020.11756084664548169No Hit
GAACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGAT1156660.11621846539457689No Hit
GCACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATCAATAGAT1153210.1158718175416112No Hit
GGACCGACGCGGATTACGGTGGCGGCCTACTGTAGGCACCATTAATAGAT1152210.11577133990307042No Hit
TCTTATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAATA1133930.113934608670545No Hit
TATTATGATTCATGATAACTCGACGGATCGCATCTGTAGGCACCATCAAT1073970.10790996946363993No Hit
ACAGAGCAGCGATCACCTCCCGCTCTCAGCCTGTAGGCACCATCAATAGA1031240.10361655996879245No Hit
CTGATGATTCATGATAACTCGACGGATCGCACCGTAGGCACCATCAATAG1018190.10230532678583527No Hit
GTCTGATGATTCATGATAACTCGACGGATCGCACTGTAGGCACCATCAAT1016200.10210537628513915No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)