FastQCFastQC Report
Thu 29 Jun 2023
SRR533665.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR533665.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84163518
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length36
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAA3718010.4417602885848949No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA3036580.3607952794939014No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAA2490260.29588354422161867No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTANAAA2303850.2737349928742285No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTNAAA1641640.195053633570783No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCNAAA1443600.17152324835090663No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAA1341500.1593921014565955No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCANAAA1229530.14608823742372556No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1215160.14438084681773877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)