FastQCFastQC Report
Sat 1 Jul 2023
SRR5512737_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5512737_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26871588
Total Bases769.3 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCTGGGAATACCGGGTGCTGTAGGCTT622510.23166103916151143No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG397430.14789970730423524No Hit
GGAGAGCGACGCTCAGACAGGC379880.14136864557464932No Hit
TGGCAATTTTTGACAGTCTCTACGGAGACTG369850.13763607867164382No Hit
GGCAATTTTTGACAGTCTCTACGGAGACTG331200.12325285725577513No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGACC309830.11530021969672949No Hit
TGGGGGGGCCGGGCCCCCCCTCCACCGGCG307130.11429544096910091No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA289890.10787974272305752No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT277910.10342150229454246No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC272530.10141938764467512No Hit
GGAGAGCGACGCTCAGACAGG271250.10094304809972526No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)