FastQCFastQC Report
Mon 3 Jul 2023
SRR5515145.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5515145.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14287412
Total Bases448.8 Mbp
Sequences flagged as poor quality0
Sequence length12-48
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC9642676.749066940884746No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGC8925976.2474365546398465No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGC5180803.6261290708212233No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC4706853.2944034930888813No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGG3294002.3055260112888187No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG3104452.172856777700538No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC2438461.706719173493422No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGG2371131.6595937738759126No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC2274681.5920867964051153No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCC1777021.2437661908258824No Hit
TTGGTGGTTCAGTGGTAGAATTCTCGCC1735521.2147196427176594No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGC1692671.1847282068998921No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCG1324810.9272568048013173No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG1179590.8256148839271942No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCT1139840.7977931902572698No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGG1081210.7567570669901589No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGC945650.6618763426154436No Hit
GGTTCCATGGTGTAATGGTTAGCACTCTGG916450.6414387714164049No Hit
GCATTTGTGGTTCAGTGGTAGAATTCTCGCC916320.6413477822295599No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG839400.5875101802901743No Hit
TTGGTGGTTCAGTGGTAGAATTCTCGC820970.5746107132628359No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC668570.46794338960757903No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGT641290.4488496587065593No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGG608330.4257804002572334No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGG572400.40063238884690944No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGG559740.39177144188184676No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCT549110.3843313260652104No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT542270.37954389500351776No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC528720.3700600220669775No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC488910.3421963333877402No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCC459080.321317814590914No Hit
GCGGGAGACCGGGGTTCGATTCCCCGACGGGG455540.3188401090414415No Hit
ACGATTAAAGTCCTACGTGATCTGAG415560.29085743450248375No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCA400590.28037967967886696No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGG388590.2719806778162483No Hit
GCATTGGTGGTTCAGTGGTAGAATTCCCGCC378050.2646035545135816No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGC376760.2637006618133501No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCG369290.25847228315387No Hit
TGCACGAGGCCCCGGGTTCAATCCCCGGCACCTCCACC363280.25426578305434183No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGT347020.24288513553049357No Hit
ACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGG342670.23984049735529428No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGG338190.23670486999325No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGC337850.23646689827380912No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGG325220.227626948813403No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCG320250.22414836220863515No Hit
ACGCGGGAGACCGGGGTTCAATTCCCCGACGGGG301780.21122089850842124No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCCC296070.20722437345545858No Hit
GCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC292400.20465567871914103No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCG291550.20406074942053887No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCC282180.19750252879947747No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGC281510.19703358452881461No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGC280450.19629167269761663No Hit
AGCATTGGTGGTTCAGTGGTAGAATTCTCGCC273370.19133626159867162No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCC273110.19115428322498154No Hit
ACGCGGGAGACCGGGGTTCAATTCCCCGACGGGGAGC270540.18935549699273738No Hit
TTGTGGTTCAGTGGTAGAATTCTCGCC256940.1798366282151029No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCC256920.1798226298786652No Hit
ACGATTAAAGTCCTACGTGATCTGAGT249630.1747202362471244No Hit
ACGCGGGAGACCGGGGTTCAATTCCCCGACGGGGAGCC234740.1642984747692584No Hit
GCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC231920.16232470933154305No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCT230720.16148480914528118No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACAGGG225930.15813220756845256No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCGGG221960.15535353778556957No Hit
TTGGTGGTTCAGTGGTAGAATTCTCGCT213730.14959322234145694No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCT210780.14752846771689654No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCA209860.14688454424076242No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGCG209330.14651358832516342No Hit
TTTGTGGTTCAGTGGTAGAATTCTCGCC209250.14645759497941266No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCT203350.14232808573029182No Hit
TGGGTGGTTCAGTGGTAGAATTCTCGCC202410.14167016391772003No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGGG196350.1374286679770976No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCACC196320.13740767047244104No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCA194500.13613382185661058No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG190200.13312417952250555No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCG186010.13019152803880787No Hit
GCATGGGTGGTTCAGTGGTAGAATTCCCGCC185960.13015653219771364No Hit
GCGTTGGTGGTATAGTGGTGAGCATAGCTGC184640.12923264199282558No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGTG180000.12598502793927968No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGGC179930.12593603376174775No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGA173310.1213025844008698No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAAC169900.11891586803824235No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGC165990.11617919326467244No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCCC165850.11608120490960855No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGC164690.11526930139622207No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCCCC157430.11018790526933779No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGC157130.10997793022277233No Hit
AGCATTGGTGGTTCAGTGGTAGAATTCTCGC148580.10399364139565655No Hit
ACGATTAAAGTCCTACGTGATCTGAGC147060.1029297678263915No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGC144590.10120097327633584No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCCGG144350.10103299323908346No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTG143380.10035407392185512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)