FastQCFastQC Report
Wed 27 Sept 2023
SRR578267.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR578267.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29191586
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGCTGAAAGAATATGAACCCGAGATGGGATGGAATTCTCGGGTGCCAA731830.2506989514033256No Hit
TGAGATTGGCAAGATCCGAGACCAGATGGCTGTGGAATTCTCGGGTGCCA431410.1477857352457657No Hit
AAGGGCACTGAAGATGAACTGGACAAATACTTGGAATTCTCGGGTGCCAA401920.1376835092139221No Hit
CTGAAGCTCGACAAAGAGAACGCCTTGGATCTGGAATTCTCGGGTGCCAA310090.1062258145206636No Hit
ATTGATGACTTAGAAGACGAGCTGTATGCTTGGAATTCTCGGGTGCCAAG298710.10232743092478772No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)