FastQCFastQC Report
Tue 4 Jul 2023
SRR6001737_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6001737_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20671753
Total Bases614.3 Mbp
Sequences flagged as poor quality0
Sequence length24-38
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGCTGAGGCGTGATGACGAGGCAC6439543.115139775518796No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACCC2363721.1434540650713076No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGC1849230.8945685448157202No Hit
AACTTGCCCCGAGATGAGTTCTCCCTGACCC1253740.6064991198375871No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGC1247310.6033885950552912No Hit
ATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA974720.4715226618661707No Hit
AAGGCTGAGGCGTGATGACGAGGCA792900.3835668895618093No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACCCT776340.37555595792964436No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGA769290.37214550696305243No Hit
AAAGGCTGAGGCGTGATGACGAGGCAC674910.3264890016826343No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACTCC617820.2988716051318918No Hit
ACCGGAGTGGACGCATCACTGGTGTTCGGGT616870.29841204081724465No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC590140.28548135225880455No Hit
AGGCACGCTGATATGTAGGTGAAGCGAC556560.2692369631158035No Hit
TAAGGCTGAGGCGTGATGACGAGGCAC547540.2648735208862064No Hit
ACGGTGCTGAAGCAACAAATGCCCTGCTTCC496820.2403376240031506No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGC476670.23059002301352963No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGG439760.21273474000971276No Hit
AAGGCTGAGGCGTGATGACGAGGC437460.21162211061635655No Hit
TAGGCTGAGGCGTGATGACGAGGCAC408370.19754976754995088No Hit
AACTTGCCCCGAGATGAGTTCTCCCTGACCCT370630.1792929704607055No Hit
AAAATGCCCTGCTTCCAGGAAAAGCCTCTAAGC365430.17677746052790008No Hit
AAAACCGGGAGATAGCTGGTTCTCCCCGAAAGC333800.161476387609701No Hit
TTTGCCCCGAGATGAGTTCTCCCTGACCC316150.15293816639546728No Hit
TCCCCATGCGAGAGTAGGGAACTGCCAGGCAT309800.14986634176598376No Hit
ATGTACACGGAGTCGACCCGCAACGCGA307640.1488214376400492No Hit
TAGGGACGGCATCACAATCTAGTGGTCA306810.14841992355462066No Hit
ACTCATCTCCGGGGGTAGAGCACTGTTTCGGC303150.14664939156345377No Hit
AACTTGCCCCGAGATGAGTTCTCCCTGACTCC296650.14350500414744702No Hit
ACGGCGCGAGCAGGTGCGAAAGCAGGTCATAGTG296530.14344695391822843No Hit
AAAACGATGTCGACTTGGAGGTTGTGCCC288940.13977527692015285No Hit
GCCGATATAGCTCAGTTGGTAGAGCAGCGCA280970.1359197741962184No Hit
AAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCT276350.13368484037130282No Hit
AATTCATCTCCGGGGGTAGAGCACTGTTTCGGC269270.13025987684740623No Hit
AAAATGCCCTGCTTCCAGGAAAAGCCTCT264490.12794754271686587No Hit
TACTCATCTCCGGGGGTAGAGCACTGTTTCGGC259490.12552878316609142No Hit
AGGTTAATGAGGCGAACCGGGGGAACTGA257550.12459030446039096No Hit
AGAAGTGAAACGCCGTAGCGCCGATGGT249350.1206235387971209No Hit
GCCGAGGTGGTGGAATTGGTAGACACGCTACC226530.10958432020738637No Hit
ATCAGGTAACATCAAATCGTACCCCAAACCGAC219540.10620289435540373No Hit
ACCGCCAGCTAAGGTCCCAAAGTCATGG217320.10512896511485988No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTG216150.10456297537997866No Hit
CGGCACGTAGCGCAGCCTGGTAGCGCACCG216080.10452911274626783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)