FastQCFastQC Report
Tue 4 Jul 2023
SRR6001738_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6001738_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16625543
Total Bases487.1 Mbp
Sequences flagged as poor quality0
Sequence length24-38
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTGCCCCGAGATGAGTTCTCCCTGACCC2559421.539450470880861No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGC2188931.3166066215100463No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC1375450.8273113245083183No Hit
AAAATGCCCTGCTTCCAGGAAAAGCCTCT1369150.8235219745905442No Hit
AAGGCTGAGGCGTGATGACGAGGCAC1050340.6317628242277561No Hit
AACTTGCCCCGAGATGAGTTCTCCCTGACCC1036760.6235946699605541No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGC885380.5325420047934676No Hit
TTTGCCCCGAGATGAGTTCTCCCTGACCC850730.5117005802457099No Hit
ACCGGAGTGGACGCATCACTGGTGTTCGGGT652350.3923781617238006No Hit
AAAACGATGTCGACTTGGAGGTTGTGCCC624760.3757832150204057No Hit
AAAACCGGGAGATAGCTGGTTCTCCCCGAAAGC623620.37509752313052275No Hit
ACTAACTGGAGGACCGAACCGACT611360.3677233278937115No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACTCC576350.3466653690649382No Hit
AAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCT531590.319742940125324No Hit
ATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA525480.3160678721891971No Hit
AGAAGTGAAACGCCGTAGCGCCGATGGT517740.3114123851473603No Hit
ACTTGCCCCGAGATGAGTTCTCCCT514740.3096079328055631No Hit
AGCGAAGCTCTTGATCGAAGCCCCGGT468340.28169906991909976No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGC449300.2702468123898269No Hit
TAGCGAAGCTCTTGATCGAAGCCCCGGT439880.2645808320365837No Hit
AGCTGATGATGCGGGTTCGATTCCCGCTGCCCGC422480.25411500845415996No Hit
AAAATGCCCTGCTTCCAGGAAAAGC406960.24477997500592913No Hit
ACCGCCAGCTAAGGTCCCAAAGTCATGG397950.2393606031393982No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACCCT391300.23536073378174777No Hit
TACTCATCTCCGGGGGTAGAGCACTGTTTCGGC360900.21707561671820286No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACC358450.21560198063906846No Hit
AGGCACGCTGATATGTAGGTGAAGCGAC357910.21527717921754497No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTG332240.19983708201290026No Hit
ACTCATCTCCGGGGGTAGAGCACTGTTTCGGC331820.19958445868504868No Hit
AGGTTAATGAGGCGAACCGGGGGAACT322270.19384028539699427No Hit
AGGGACGGCATCACAATCTAGTGGTCA313160.1883607651190701No Hit
AATTCATCTCCGGGGGTAGAGCACTGTTTCGGC310530.18677886189942788No Hit
TAGGGACGGCATCACAATCTAGTGGTCA300490.1807399613955466No Hit
AGGTTAATGAGGCGAACCGGGGGAACTGA290830.17492962485495964No Hit
CGGAGGTTCGAATCCTCCCGGATGC286790.17249962903467272No Hit
ACGGTGCTGAAGCAACAAATGCCCTGCTTCC286060.17206054563150208No Hit
AACGATGTCGACTTGGAGGTTGTGCCC274490.16510137443330422No Hit
GCGGGAATAGCTCAGTTGGTAGAGCACGACC273600.1645660535719044No Hit
ACGATGTCGACTTGGAGGTTGTGCC269460.16207590934022426No Hit
TATTCATCTCCGGGGGTAGAGCACT269360.16201576092883102No Hit
ACTGCGAAGGGGGGACGGAGAAGGCT268420.16145036586173456No Hit
ACTGGTTCGAGTCCAGTCAGAGGAGCCA266040.16001883367057546No Hit
AAACCGGGAGATAGCTGGTTCTCCCCGAAAGC265220.15952561669715087No Hit
AACTTGCCCCGAGATGAGTTCTCCCT264700.15921284495790602No Hit
AGGTTAATGAGGCGAACCGGGGGAACTGAAAC264570.15913465202309482No Hit
ACGGCGCGAGCAGGTGCGAAAGCAGGTCATAGTG253030.15219352534831496No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGA251950.15154392250526796No Hit
TTGCCCCGAGATGAGTTCTCCCTGACCC249850.15028080586600992No Hit
AAACCGGGAGATAGCTGGTTCTCCCCGAAAGCT249840.1502747910248706No Hit
GCGAAGGTGGCGGAATTGGTAGACGCG248860.14968533659321684No Hit
TTTGCCCCGAGATGAGTTCTCCCTGACTCC237610.14291864031147733No Hit
AGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGC237240.14269609118932236No Hit
ACGATGTCGACTTGGAGGTTGTGCCC234040.14077134202473868No Hit
AAGGTCCCAAAGTCATGGTTAAGTGG222240.13367382948033638No Hit
AACTTGCCCCGAGATGAGTTCTCCCTGACTCC218790.13159870928726958No Hit
AGGGCTTACGGGTTCAAGTCCCGTCCTCGGT217510.13082880962143612No Hit
ATGGGAAACAGGTTAATATTCCTGTACTTGGTG211340.12711765263847322No Hit
GCCGATATAGCTCAGTTGGTAGAGCAGCGCA203920.12265464051309481No Hit
AATGAGGCGAACCGGGGGAACTGAAAC198580.11944271534469582No Hit
TAAACGATGTCGACTTGGAGGTTGTGCCC197950.1190637803529184No Hit
TAAGCTCTTGATCGAAGCCCCGGT190870.114805272826277No Hit
AAGGCTGAGGCGTGATGACGAGGC182940.1100355038027931No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGC182640.10985505856861337No Hit
CGGCACGTAGCGCAGCCTGGTAGCGCACCG178230.10720251362617149No Hit
ACCGGAGTGGACGCATCACTGGTGTTCGGG177510.10676944506414017No Hit
AGGTTAATGAGGCGAACCGGGGGAACTG174900.1051995715267766No Hit
AAAAGTGCGTCGTAGTCCGGATTGGAGTCTGC171950.10342519339067602No Hit
TTGGGAAACAGGTTAATATTCCTGTACTTGGTG169540.10197561667609895No Hit
TTTGCCCCGAGATGAGTTCTCCCTGACCCT167050.10047792123240727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)