FastQCFastQC Report
Tue 4 Jul 2023
SRR6001739_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6001739_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8816443
Total Bases253.9 Mbp
Sequences flagged as poor quality0
Sequence length24-38
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCCGGGGGTAGAGCACTGTTTCGGC1143291.296770137344505No Hit
ACGTAGCTCAGTTGGTTAGAGCACATC778600.8831225926374163No Hit
AGGTTAATGAGGCGAACCGGGGGAACT658150.7465028696947285No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTC517810.5873230281191633No Hit
AAACCGGGAGATAGCTGGTTCTCCCCGAAAGCT447090.5071092729800443No Hit
AAAACCGGGAGATAGCTGGTTCTCCCCGAAAG443180.5026743778641795No Hit
AAGGCTGAGGCGTGATGACGAGGCAC422590.4793202882386922No Hit
AAAATGCCCTGCTTCCAGGAAAAGCCTCT407670.4623973636533464No Hit
ATCTCCGGGGGTAGAGCACTGTTTCCGC400700.4544916810555005No Hit
AGGAGGTCTGCGGTTCGATCCCGCATAGCTCC384850.4365139092942585No Hit
ACTTGCCCCGAGATGAGTTCTCCCT383650.43515281616406976No Hit
TAAGCTCTTGATCGAAGCCCCGGT315150.3574570833157998No Hit
AGGTTAATGAGGCGAACCGGGGGAACTGA312440.35438328133012376No Hit
AGGGACGGCATCACAATCTAGTGGTCA311340.35313561262745075No Hit
TAGCGAAGCTCTTGATCGAAGCCCCGGT305820.34687458422858286No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGC274790.31167898437045416No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACCC262260.29746690360273415No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTG240260.27251352954927516No Hit
ATGCGAGAGTAGGGAACTGCCAGGCAT231670.2627703712256746No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTT230910.26190834557655507No Hit
AAGTCAGATGTGAAATCCCCGGGCTC224300.2544109909177658No Hit
ACCGGAGTGGACGCATCACTGGTGTTCGGGT219260.2486943997709734No Hit
TAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCT216110.24512153030422815No Hit
AGGCACGCTGATATGTAGGTGAAGCGAC215150.2440326558000772No Hit
AAGGCGCTTGAGAGAACTCGGGTGAAGGAACT194860.2210188394571371No Hit
AACTTGCCCCGAGATGAGTTCTCCCT194200.22027023823553332No Hit
TAGGCGTGTGACTGCGTACCTTTTGT191880.21763879151716856No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGC178820.20282556128361517No Hit
AAAACGATGTCGACTTGGAGGTTGTGCCC177120.20089734601584788No Hit
TATTCATCTCCGGGGGTAGAGCACT175090.19859483013727874No Hit
AAACCGGGAGATAGCTGGTTCTCCCCGAAAG174040.19740387364836362No Hit
ATCTCCGGGGGTAGAGCACTGTTTC171370.19437544143369384No Hit
ACTTTCAGCGGGGAGGAAGGGAGT170240.1930937454027662No Hit
AGAAGTGAAACGCCGTAGCGCCGATGGT163390.18532417211793917No Hit
ACTGCGAAGGGGGGACGGAGAAGGCT162820.18467765288109955No Hit
GCGGGAATAGCTCAGTTGGTAGAGCACGACC160490.18203486371998323No Hit
AAAACGATGTCGACTTGGAGGGTGTGCCC158280.17952818387188574No Hit
AAACCGGGAGATAGCTGGTTCTCCCCGAAAGC157740.17891569196330084No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGG157550.17870018555102096No Hit
AGGTGGGAGGCTTTGAAGTGTGGACGCC154330.1750479189850147No Hit
AGGAGGTCTGCGGTTCGATCCCGCAT149350.16939938249473172No Hit
ATGCGTTGTTGGGTAGGGGAGCGTTCTGT147480.1672783457001877No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGG145670.16522536356215314No Hit
TAGGGACGGCATCACAATCTAGTGGTCA142090.16116476905709026No Hit
TTTGCCCCGAGATGAGTTCTCCCT137570.1560379849333796No Hit
AGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGC136870.15524401394076953No Hit
TCGACTTAGCTCAGTAGGTAGAGCAACTG134570.1526352521079079No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGA132690.15050287287061231No Hit
AAGACGGAAAGACCCCGTGAACCTTT130440.14795082325150857No Hit
CGGAGGTTCGAATCCTCCCGGATGC130140.1476105499689614No Hit
TGAGCTCGGATATACTTAGAAGTTCGCCG128980.14629482660977902No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCT125570.14242705363149288No Hit
AGTGAAATTGAACTCGCTGTGAAGATGC123770.14038541393620987No Hit
TTTGCCCCGAGATGAGTTCTCCCTGACCC122260.13867270508072246No Hit
AGCTCAGCTGGATAGAGTACTCGGC122060.13844585622569103No Hit
GCGAAGGTGGCGGAATTGGTAGACGCG121050.13730026950778224No Hit
AGGGGAGCCGAAGGGAAACCGAGTCTT119460.13549682111028222No Hit
AGGTTAATGAGGCGAACCGGGGGAACTG118820.1347709047741816No Hit
ATGCGAGAGTAGGGAACTGCCAGGCA115020.13046077652858415No Hit
TCCCCATGCGAGAGTAGGGAACTGCCAGGCAT114570.1299503666047634No Hit
TAGGGGAGCCGAAGGGAAACCGAGTCTT113350.12856658858907158No Hit
ACGGCGCGAGCAGGTGCGAAAGCAGGTC112590.12770456293995208No Hit
TAACCTGGGAACTGCATCTGATACTGGC110460.1252886226338672No Hit
AAGGGTCCTGAAGGAACGTTGAAGAC109130.1237800777479081No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACC109050.1236893382058955No Hit
TGGGGCTGATTCTGGATTCGACGGGATTTGCG109000.12363262599213763No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCCGC108420.12297476431254646No Hit
AAGTCGACCGCCTGGGGAGTACGGCCGC108200.12272523057201186No Hit
AACTTGCCCCGAGATGAGTTCTCC104070.11804080171561253No Hit
AAGTCAGATGTGAAATCCCCGGGCT102360.11610124400509365No Hit
TATGCGAGAGTAGGGAACTGCCAGGCAT99350.1126871687368704No Hit
AGAGGGGGGTAGAATTCCAGGTGT99260.11258508675210627No Hit
AAGGCGCTTGAGAGAACTCGGGTGAAGG97470.11055478949957483No Hit
AGCGAAGCTCTTGATCGAAGCCCCGGT97290.11035062553004651No Hit
AGGGCTTACGGGTTCAAGTCCCGTCCTCGGT97210.11025988598803395No Hit
TTAGCGAAGCTCTTGATCGAAGCCCCGGT97120.1101578040032698No Hit
ATGAAAGCTACTAAACTGGTACTGGGCGC96800.10979484583521948No Hit
AGGTAACATCAAATCGTACCCCAAACC95260.10804810965147735No Hit
TTAGGTTAATGAGGCGAACCGGGGGAACT93330.1058590182004239No Hit
AGGTAACATCAAATCGTACCCCAAACCG92220.10460000705499939No Hit
AAAATGCCCTGCTTCCAGGAAAAGCCT92210.10458866461224782No Hit
TAACCGGTACTAATGAACCGTGAGGCTT92110.1044752401847321No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGG92110.1044752401847321No Hit
TGCCGACTTAGCTCAGTAGGTAGAGCAACTG90950.10315951682554972No Hit
AACCGGTACTAATGAACCGTGAGGCTT89630.10166231438234219No Hit
AAGGCGCTTGAGAGAACTCGGGTGAAGGAAC88880.10081163117597425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)