FastQCFastQC Report
Tue 4 Jul 2023
SRR6001740_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6001740_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7472980
Total Bases210.3 Mbp
Sequences flagged as poor quality0
Sequence length24-38
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGCTGAGGCGTGATGACGAGGCAC2332863.121726540148642No Hit
AGGGACGGCATCACAATCTAGTGGTCA540080.7227103511584401No Hit
AAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCT482480.6456326659512002No Hit
ACGTAGCTCAGTTGGTTAGAGCACATC430100.5755401459658663No Hit
AAGGCTGAGGCGTGATGACGAGGC418580.5601246089244184No Hit
AAAATGCCCTGCTTCCAGGAAAAGC397750.5322508557496474No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC388620.520033507382597No Hit
TAAGGCTGAGGCGTGATGACGAGGCAC372240.49811454065178823No Hit
AAAGGCTGAGGCGTGATGACGAGGCAC324960.434846607377512No Hit
TATTCATCTCCGGGGGTAGAGCACT303800.40653126329790795No Hit
AAACCGGGAGATAGCTGGTTCTCCCCGAAAGCT289510.3874090389643757No Hit
ACGTAGCGCAGCCTGGTAGCGCACCG275380.36850091931197465No Hit
AGGTTAATGAGGCGAACCGGGGGAACT270590.3620911604206086No Hit
TAGGGACGGCATCACAATCTAGTGGTCA265320.35503908748584906No Hit
AAAATGCCCTGCTTCCAGGAAAAGCCTCT258080.34535085066466126No Hit
TAGCGAAGCTCTTGATCGAAGCCCCGGT251420.3364387433125741No Hit
ACTTTCAGCGGGGAGGAAGGGAGT245480.3284901070255775No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTG233460.31240549285559444No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTC208860.279486898131669No Hit
TAAGGTCCCAAAGTCATGGTTAAGTGG206550.276395761797837No Hit
AAGGCTGAGGCGTGATGACGAGGCA204740.27397370259254006No Hit
AAGGCTGAGGCGTGATGACGAGGCCC204300.2733849147194292No Hit
TTAGGGACGGCATCACAATCTAGTGGTCA200530.26834007317027475No Hit
TGAGCTCGGATATACTTAGAAGTTCGCCG194250.2599364644358743No Hit
AAAACCGGGAGATAGCTGGTTCTCCCCGAAAG190000.25424930884332625No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGC189220.2532055485228115No Hit
ACTTGCCCCGAGATGAGTTCTCCCT187470.25086377857293873No Hit
ACTGGTTCGAGTCCAGTCAGAGGAGCCA185830.24866920559134376No Hit
AAAAGAGAAGCGACCTCGCGAGAGC184760.2472373805362787No Hit
AGGTTAATGAGGCGAACCGGGGGAACTGA177240.23717446052311125No Hit
TAAGCTCTTGATCGAAGCCCCGGT164390.21997917831976No Hit
TAACCGGGAGATAGCTGGTTCTCCCCGAAAGCT163400.21865440560526056No Hit
TTTCCAAAGGAATTCGCTCCACTGTG161900.21664717421965535No Hit
ATAGCTCAGTTGGTAGAGCAGCGC152900.2046037859060241No Hit
AAGGTCCCAAAGTCATGGTTAAGTGG151300.20246273909471185No Hit
AGAGGGGGGTAGAATTCCAGGTGT145350.19450072126514456No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACCC142230.19032567998308572No Hit
AAGTCAGATGTGAAATCCCCGGGCTC140920.18857269790632386No Hit
TTTTCCAAAGGAATTCGCTCCACTGTG140480.187983910033213No Hit
ACTAACTGGAGGACCGAACCGACT139370.18649855880786514No Hit
ATCTCCGGGGGTAGAGCACTGTTTCCGC139040.186056967903032No Hit
TAACCTGGGAACTGCATCTGATACTGGC138730.18564214008334026No Hit
ACTGCGAAGGGGGGACGGAGAAGGCT130610.17477632751593072No Hit
TGGGGCTGATTCTGGATTCGACGGGATTTGCG121930.16316114856456193No Hit
TGCCGACTTAGCTCAGTAGGTAGAGCAACTG119970.16053836622070444No Hit
ATCTCCGGGGGTAGAGCACTGTTTC116210.15550690621412075No Hit
AGGGCTTACGGGTTCAAGTCCCGTCCTCGGT113040.1512649572192084No Hit
TAGGCTGAGGCGTGATGACGAGGCAC110990.14852174099221463No Hit
AAAATGCCCTGCTTCCAGGAAAAGCCT107490.14383820109246911No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGC98070.13123278799086843No Hit
TGGGGCTGATTCTGGATTCGACGGG95240.12744581144335995No Hit
TTAGCGAAGCTCTTGATCGAAGCCCCGGT94350.1262548541545675No Hit
ACAGCTCAGTTGGTAGAGCAGCGC94240.1261076571862898No Hit
TGGGGCTGATTCTGGATTCGACGG94190.1260407494734363No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGA92910.1243279120243865No Hit
AAGACGGAAAGACCCCGTGAACCTTT89120.11925630739009072No Hit
TCCCCATGCGAGAGTAGGGAACTGCC86950.11635251265224851No Hit
AAAAGTGGTACGCGAGCTGGGTTT83640.11192322206134635No Hit
TAGGCGTGTGACTGCGTACCTTTTGT83460.11168235429507371No Hit
AAGGCGCTTGAGAGAACTCGGGTGAAGGAACT82030.10976879370746342No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGG79600.10651707886278297No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTT79330.10615577721337405No Hit
TTGAGCTCGGATATACTTAGAAGTTCGCCG78880.10555360779769248No Hit
AGGTTAATGAGGCGAACCGGGGGAACTG78300.10477747832859181No Hit
AAGGGTCCTGAAGGAACGTTGAAGAC78290.10476409678602111No Hit
AGGTAACATCAAATCGTACCCCAAACC77400.10357313949722868No Hit
AGACCGCCAGCTAAGGTCCCAAAGTCATGGTT77150.10323860093296114No Hit
GCCGATATAGCTCAGTTGGTAGAGCAGCGCA77040.10309140396468344No Hit
AGGTGGGAGGCTTTGAAGTGTGGACGCC76880.10287729928355221No Hit
AAATGGTTCAACGCTGACAAAGGCTTCGGC76550.10243570837871906No Hit
TCGACTTAGCTCAGTAGGTAGAGCAACTG76030.10173986816504259No Hit
TAGTCAGAGGCGATGAAGGACGTGCT75580.10113769874936103No Hit
AGTTCAGTCGGTAGAACGGCGGGC75240.1006827263019572No Hit
AGTTTGACTGGGGCGGTCTCCTCCT74930.10026789848226543No Hit
ACCGGAGTGGACGCATCACTGGTGTTCGGGT74880.10020099076941194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)