FastQCFastQC Report
Tue 4 Jul 2023
SRR6001741_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6001741_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16047781
Total Bases463.2 Mbp
Sequences flagged as poor quality0
Sequence length24-38
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGCTGAGGCGTGATGACGAGGC2110151.3149169969355887No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGC1845341.149903528718394No Hit
AAGGCTGAGGCGTGATGACGAGGCAC1818171.1329728390485887No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC1719561.0715250912260081No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACCC1691461.0540148821821533No Hit
TAGCGAAGCTCTTGATCGAAGCCCCGGT1571800.9794500560544789No Hit
AGCGAAGCTCTTGATCGAAGCCCCGGT1113850.6940834997685973No Hit
AGGCACGCTGATATGTAGGTGAAGCGAC965010.6013354743562366No Hit
ACCGCCAGCTAAGGTCCCAAAGTCATGG842110.5247516775060677No Hit
AACTTGCCCCGAGATGAGTTCTCCCTGACCC608670.37928608322857843No Hit
ACTAACTGGAGGACCGAACCGACT574700.35811804759798255No Hit
TTTGCCCCGAGATGAGTTCTCCCTGACCC557220.3472255759223035No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGA534950.33334826790071476No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACTCC480190.29922517013411387No Hit
ATAGCTCAGTTGGTAGAGCAGCGC466930.29096234551057243No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTG457550.28511730064112917No Hit
TAGGCACGCTGATATGTAGGTGAAGCGAC423400.2638370999703947No Hit
ATAGCTCAGTTGGTAGAGCAGCGCA420810.262223169670623No Hit
ACCGGAGTGGACGCATCACTGGTGTTCGGGT386840.2410551340400271No Hit
ATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA384460.23957206295375041No Hit
TCCCCATGCGAGAGTAGGGAACTGCC383880.2392106422688595No Hit
AAATGGTTCAACGCTGACAAAGGCTTCGGC374250.23320981262144594No Hit
ACTGGTTCGAGTCCAGTCAGAGGAGCCA370340.2307733386939914No Hit
AGGGACGGCATCACAATCTAGTGGTCA361650.22535825981174593No Hit
ACGATGTCGACTTGGAGGTTGTGCC353050.21999926344956977No Hit
AAAACGATGTCGACTTGGAGGTTGTGCCC351810.21922657095083736No Hit
ATCACGGGAGACACACGGCGGGGGG345890.21553758740850215No Hit
AAAATGGTTCAACGCTGACAAAGGCTTCGGC344510.21467765543410644No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACCCT336590.2097423936680093No Hit
TAAGCTCTTGATCGAAGCCCCGGT335000.2087516024801186No Hit
AAAACCGGGAGATAGCTGGTTCTCCCCGAAAGC329320.2052121723246348No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGC307470.19159658273003602No Hit
AAGGTCCCAAAGTCATGGTTAAGTGG306700.19111676561388768No Hit
GCGGGAATAGCTCAGTTGGTAGAGCACGACC299810.18682333713302793No Hit
TACTCATCTCCGGGGGTAGAGCACTGTTTCGGC298940.1862812061056915No Hit
TAGGGACGGCATCACAATCTAGTGGTCA298360.18591978542080054No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGC297620.18545866247800866No Hit
AAATGGTTCAACGCTGACAAAGGCTTCGGCT297460.1853589602201077No Hit
TATGGTTCAACGCTGACAAAGGCTTCGGC297420.18533403465563245No Hit
ACTTGCCCCGAGATGAGTTCTCCCT297300.1852592579622067No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGG297150.1851657870954246No Hit
AAAATGGTTCAACGCTGACAAAGGCTTCGGCT292880.18250498308769295No Hit
AAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCT284690.17740147376138796No Hit
AGCTAAGGTCCCAAAGTCATGGTTAAGTGG277260.1727715501601125No Hit
AAGGCTGAGGCGTGATGACGAGGCA268480.1673003887577977No Hit
ACGATGTCGACTTGGAGGTTGTGCCC258160.16086959312318633No Hit
GCCGATATAGCTCAGTTGGTAGAGCAGCGCA257990.16076365947416657No Hit
TGGGGCTGATTCTGGATTCGACGGGATTTGCG255780.15938652203690964No Hit
ATCACGGGAGACACACGGCGGGGG254260.1584393505868506No Hit
TAAGGTCCCAAAGTCATGGTTAAGTGG252260.15719307236308872No Hit
TTTCCAAAGGAATTCGCTCCACTGTG250740.15624590091302965No Hit
TTTCGGACGCGGGTTCAACTCCCGCC249420.15542335728534679No Hit
TAAGGCTGAGGCGTGATGACGAGGC247140.15400260011025824No Hit
AAAAATGGTTCAACGCTGACAAAGGCTTCGGCT246470.153585096905298No Hit
AGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGC245640.1530678914424368No Hit
TTCCCCATGCGAGAGTAGGGAACTGCC241760.15065011168833872No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGC241320.1503759304791111No Hit
ACCGCCATCCAGAGCAATGAATTCCGC238040.14833203419214158No Hit
ACGATGGTTACAAATCTCTGGACGAAGGTC238000.14830710862766633No Hit
AAAAATGGTTCAACGCTGACAAAGGCTTCGGC237600.14805785298291396No Hit
ACGCTGATATGTAGGTGAAGCGAC237060.14772135786249826No Hit
AACGATGTCGACTTGGAGGTTGTGCCC235680.14686142588810253No Hit
ACGGCGCGAGCAGGTGCGAAAGCAGGTCATAGTG232960.14516648750378636No Hit
AATTCATCTCCGGGGGTAGAGCACTGTTTCGGC227250.14160836317494613No Hit
AAGGCACGCTGATATGTAGGTGAAGCGAC224520.13990719339951113No Hit
AAAGGCTGAGGCGTGATGACGAGGC222700.1387730802158878No Hit
ACGTAGCGCAGCCTGGTAGCGCACCG221550.1380564702372247No Hit
AAAATGCCCTGCTTCCAGGAAAAGCCTCT221250.1378695285036604No Hit
TAAGGCTGAGGCGTGATGACGAGGCAC219380.13670425836444303No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACC214950.13394375209881043No Hit
ACCGCCAGCTAAGGTCCCAAAGTC212900.13266631691945446No Hit
TATGGTTCAACGCTGACAAAGGCTTCGGCT212650.13251053214148423No Hit
ACGATGGTTACAAATCTCTGGACGAAGGTCAGA204030.12713907299707045No Hit
AGACCGCCAGCTAAGGTCCCAAAGTCATGG202260.12603611676904114No Hit
ATGGTTCAACGCTGACAAAGGCTTCGGC201330.12545659739499188No Hit
AAATGGTTCAACGCTGACAAAGGCTTCGG199200.12412931108668544No Hit
AAAGGCTGAGGCGTGATGACGAGGCAC196210.12226612514216138No Hit
AGACCGCCAGCTAAGGTCCCAAAGTC191890.1195741641788357No Hit
TTTGCCCCGAGATGAGTTCTCCCTGACTCC189310.11796646527018283No Hit
ATGGGAAACAGGTTAATATTCCTGTACTTGGTG189250.11792907692346997No Hit
TATGGTTCAACGCTGACAAAGGCTTCGG188940.11773590379878689No Hit
AGTTCAGTCGGTAGAACGGCGGGC188790.11764243293200474No Hit
ATAGGGGAGCCGAAGGGAAACCGAGTCTT187630.11691959156222284No Hit
CGGAGGTTCGAATCCTCCCGGATGC186950.11649585696614378No Hit
ACTGCGAAGGGGGGACGGAGAAGGCT185840.11580417255195594No Hit
ACGTAGCTCAGTTGGTTAGAGCACATC185790.11577301559636188No Hit
TCCCCATGCGAGAGTAGGGAACTGCCAGGCAT185770.11576055281412427No Hit
TGGGGCTGATTCTGGATTCGACGG185070.11532435543580762No Hit
ATCACGGGAGACACACGGCGGGTGC179360.11176623110696737No Hit
ACTCATCTCCGGGGGTAGAGCACTGTTTCGGC179120.11161667772011594No Hit
AACTTGCCCCGAGATGAGTTCTCCCTGACTCC175450.10932975717951286No Hit
AGCTCAGCTGGGAGAGCACCTCCC173210.10793392556889952No Hit
ACGGCGCGAGCAGGTGCGAAAGCAGGTC172580.10754134792841452No Hit
TAGCCGACTTAGCTCAGTAGGTAGAGCAACTG169570.10566569920165286No Hit
CGGTGGTTCAAGTCCACTCAGGCC168840.10521080764997978No Hit
TAGGCTGAGGCGTGATGACGAGGC168480.10498647756970263No Hit
TTGCCCCGAGATGAGTTCTCCCTGACCC166300.10362803430580216No Hit
AACTTGCCCCGAGATGAGTTCTCCCT163030.10159036940995145No Hit
AGGGCTTACGGGTTCAAGTCCCGTCCTCGGT161300.1005123387463974No Hit
AGGTTAATGAGGCGAACCGGGGGAACT161220.10046248761744693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)