FastQCFastQC Report
Tue 4 Jul 2023
SRR6001752.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6001752.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59003587
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGCTGAGGCGTGATGACGAGGCACCTGTAGGCACCATCAATTCGTATG8122111.3765451242820204No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGCTGTAGGCACCATCAATTCG7623971.2921197485840987No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACCCCTGTAGGCACCATCAATTCG7426521.2586556813910312No Hit
CGGCACGTAGCGCAGCCTGGTAGCGCACCGCTGTAGGCACCATCAATTCG5901321.0001629222982664No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCACCATCAATT5735760.9721036112601087No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTAGGCACCATCAATTC5546490.9400259004592382No Hit
AGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTCTGTAGGCAC5121640.8680218034879811No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGCTGTAGGCACCATCAATTCG4876340.8264480598442261No Hit
AGGCACGCTGATATGTAGGTGAAGCGACCTGTAGGCACCATCAATTCGTA4749180.8048968277132033No Hit
ACGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCACTGTAGGCACCATC4577110.7757341939228203No Hit
GGGGCTGATTCTGGATTCGACGGGATTTGCGCTGTAGGCACCATCAATTC4272050.7240322524798365No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGACTGTAGGCACCATCAATTC3799630.6439659337999231No Hit
GCCGATATAGCTCAGTTGGTAGAGCAGCGCACTGTAGGCACCATCAATTC3690680.6255009547131432No Hit
AACTTGCCCCGAGATGAGTTCTCCCTGACCCCTGTAGGCACCATCAATTC3233880.548081932713684No Hit
AGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGCAGCCCCTGTAGGCACC3149040.5337031458782328No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACCTGTAGGCACCATCAATT2987830.5063810781537739No Hit
TTGCCCCGAGATGAGTTCTCCCTGACCCCTGTAGGCACCATCAATTCGTA2742970.4648819062474965No Hit
GCCGACTCAGCTCAGTAGGTAGAGCAACTGCTGTAGGCACCATCAATTCG2235990.3789583165511615No Hit
CGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCACTGTAGGCACCATCA2217820.37587884275578026No Hit
ACCGGAGTGGACGCATCACTGGTGTTCGGGTCTGTAGGCACCATCAATTC2125220.3601848816411789No Hit
AAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTCTGTAGGCACCATCAAT1895970.3213313116031403No Hit
AGGTAACATCAAATCGTACCCCAAACCGCTGTAGGCACCATCAATTCGTA1679340.28461659458093624No Hit
GGCTACGTAGCTCAGTTGGTTAGAGCACATCCTGTAGGCACCATCAATTC1573660.26670581908859203No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACTCCCTGTAGGCACCATCAATTC1446710.2451901780140926No Hit
AGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGCTGTAGGCACC1420770.24079383512734576No Hit
TGGGGTATCGCCAAGCGGTAAGGCACCGGCTGTAGGCACCATCAATTCGT1355300.22969789955312375No Hit
TCCTCTGCAGTTCAGTCGGTAGAACGGCGGACTGTAGGCACCATCAATTC1344220.2278200476184609No Hit
TCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTCTGTAGGCACCATCA1313310.22258138306066036No Hit
TCAAACCGGGAGATAGCTGGTTCTCCCCGAAACTGTAGGCACCATCAATT1290710.21875110745385698No Hit
AAGGCACGCTGATATGTAGGTGAAGCGACCTGTAGGCACCATCAATTCGT1246770.21130410257939064No Hit
TGGGCGTTAAGTTGCAGGGTATAGACCCGCTGTAGGCACCATCAATTCGT1215570.20601628846734352No Hit
TCCCCATGCGAGAGTAGGGAACTGCCAGGCATCTGTAGGCACCATCAATT1172840.19877435587094053No Hit
GCCGATACAGCTCAGTTGGTAGAGCAGCGCACTGTAGGCACCATCAATTC1162250.19697954973483223No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCACCATCAAT1148870.1947118909906274No Hit
ATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCACTGTAGGCACCATCAAT1140610.19331197610070724No Hit
AAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTGTAGGCACCATCAATTC1095940.18574124993451668No Hit
GCCGATATAGCTCAGTTGGTAGAGCAGCGCCTGTAGGCACCATCAATTCG1073300.18190419507885172No Hit
CGGCACGCAGCGCAGCCTGGTAGCGCACCGCTGTAGGCACCATCAATTCG1072790.18181775965586633No Hit
GCCCGGATAGCTCAGTCGGTAGAGCAGGGGATCTGTAGGCACCATCAATT1072030.18168895392749596No Hit
ACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGCTGTAGGCACCATC1069990.18134321223555444No Hit
TCCTCTGCAGTTCAGTCGGTAGAACGGCGGCTGTAGGCACCATCAATTCG1058110.17932977532365957No Hit
TCCCCATGCGAGAGTAGGGAACTGCCAGGCACTGTAGGCACCATCAATTC1040230.17629945108252484No Hit
TGGGGTATCGCCAAGCGGTAAGGCACCGGTCTGTAGGCACCATCAATTCG1026440.17396230503748866No Hit
AACCGGGAGATAGCTGGTTCTCCCCGAAAGCTCTGTAGGCACCATCAATT970670.16451033731220444No Hit
TGCCCCGAGATGAGTTCTCCCTGACCCCTGTAGGCACCATCAATTCGTAT960590.1628019665990815No Hit
GCCGACTCAGCTCAGTAGGTAGAGCAACTGACTGTAGGCACCATCAATTC951610.16128002522965257No Hit
TTTGCCCCGAGATGAGTTCTCCCTGACCCCTGTAGGCACCATCAATTCGT933390.15819207737319427No Hit
ACGTATCGGGGGTTCGAATCCCCCCCTCACCGCCACTGTAGGCACCATCA908130.15391098171709458No Hit
ATGGCACTGCCCGGTAGCTAAATGCGGAAGCTGTAGGCACCATCAATTCG869520.1473673117534363No Hit
TGGGGTATCGCCAAGCGGTAAGGCACCGGACTGTAGGCACCATCAATTCG796750.13503416326197254No Hit
AAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTCTGTAGGCACCATC765190.129685335910171No Hit
AGGGCTTACGGGTTCAAGTCCCGTCCTCGGTACCACTGTAGGCACCATCA762630.1292514639830287No Hit
AACTTGCCCCGAGATGAGTTCTCCCTGACTCCCTGTAGGCACCATCAATT746750.12656010218497393No Hit
ATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCACTGTAGGCACC737190.1249398617070518No Hit
AGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGCTGTAGGCACCA735130.12459073039067947No Hit
AGGTTAATGAGGCGAACCGGGGGAACTGACTGTAGGCACCATCAATTCGT726460.12312132819992791No Hit
AGCTCAGTAGGTAGAGCAACTGCTGTAGGCACCATCAATTCGTATGCCGT724390.12277050207134016No Hit
AAGGCTGAGGCGTGATGACGAGGCACTGTAGGCACCATCAATTCGTATGC717570.12161464014043756No Hit
ATCAGGTAACATCAAATCGTACCCCAAACCGCTGTAGGCACCATCAATTC671610.11382528319846047No Hit
TCAAACCGGGAGATAGCTGGTTCTCCCCGAACTGTAGGCACCATCAATTC664670.11264908352097305No Hit
CACAGGTTCGAATCCCGTCGTAGCCACCACTGTAGGCACCATCAATTCGT649860.11013906662996607No Hit
TGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCACTGTAGGCACC630410.10684265687101362No Hit
TAGGTTAATGAGGCGAACCGGGGGAACTGACTGTAGGCACCATCAATTCG628770.10656470766768807No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACCCTCTGTAGGCACCATCAATTC620400.10514614984339851No Hit
TCCTCTGCAGTTCAGTCGGTAGAACGGCGGACCTGTAGGCACCATCAATT607750.10300221239091785No Hit
TTGCCCCGAGATGAGTTCTCCCTGACTCCCTGTAGGCACCATCAATTCGT602440.10210226710454062No Hit
ACTCATCTCCGGGGGTAGAGCACTGTTTCGGCCTGTAGGCACCATCAATT590140.10001764807959895No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)