FastQCFastQC Report
Tue 4 Jul 2023
SRR6202813_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6202813_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19327594
Total Bases548.5 Mbp
Sequences flagged as poor quality0
Sequence length24-48
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGCATAATTTGTGGTAGTGGGGG2839561.4691740730894904No Hit
GGCATCAATATGGTGACCTCCCGGGAGCGG2478161.282187529394502No Hit
CAAAGCACCCAACTTACACTTAGGAGATT1235930.6394639705283544No Hit
ACTGCATAATTTGTGGTAGTGGGG863920.44698786615654285No Hit
TACGACTCTTAGCGGTGGATCACTCGGCTC730270.37783802784764625No Hit
AACCTGCATTAAAAATTTCGGTTGGG654520.33864535854799105No Hit
GGAGCATAGCTGGGTAGCTAAGTACGGAA625320.3235374252998071No Hit
GACTGCATAATTTGTGGTAGTGGGGG620790.3211936260664416No Hit
GGCGAGCGAGAAAACTAGTGTTAAGGAAC609430.31531601915892893No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGT531890.2751972128553611No Hit
GGCTTCTGTCGTGAGTGGCACACGTAGG526990.27266197748152204No Hit
AGGCGAGCGAGAAAACTAGTGTTAAGGAA521840.2699973933641197No Hit
GGCGAGCGAGAAAACTAGTGTTAAGGAA425860.22033782373532887No Hit
AGGCGAGCGAGAAAACTAGTGTTAAGGAAC424830.2198049069118484No Hit
GACTGCATAATTTGTGGTAGTGGGG418430.21649357907663003No Hit
CGCATGAAGATTACGGAAAAGAAGCGT382090.1976914457122806No Hit
AAGCACCCAACTTACACTTAGGAGATT357130.18477726715492884No Hit
AGGTTGCGGGTTCGACTCCTGCTGGGTA354350.18333890912650586No Hit
GGGCTTCTGTCGTGAGTGGCACACGTAGG352300.18227824942928747No Hit
ACTGCATAATTTGTGGTAGTGGGGGA335150.17340492562085066No Hit
GCGAACGTGTCCGGCGTGTTTTAGAGCT296020.15315926027833573No Hit
AATACAAGCTTGGGCTGCAGGTCGACC292070.15111555013003689No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG271940.1407003892983265No Hit
CTGGTCCGATGGTAGTGGGTTATCAGAA270480.13994499263591734No Hit
GGCATAGAGGGTGATACCCCCGTATGTG259540.1342846916175909No Hit
TACGACTCTTAGCGGTGGATCACTCGGCT255450.13216854617289664No Hit
AGGCGAGCGAGAAAACTAGTGTTAAGG236920.12258121729999089No Hit
GGTACACGGAGTCGACCCGCAACGCGG233450.12078585673933341No Hit
TCGCGGATTAGCACTACGCATCGGTTACA228000.11796605412965525No Hit
AATACAAGCTTGGGCTGCAGGTCGAC219310.11346989180339778No Hit
AGGTTGCGGGTTCGACTCCTGCTGGGT217900.11274036488970123No Hit
TCTTAGTAGCAAGAGGAAGAGAAAATAAAC210510.10891681602997248No Hit
GGTACACGGAGTCGACCCGCAACGCGT206430.10680584453502076No Hit
GGTACACGGAGTCAAGACCCGCAACGCGG206120.10664545209300236No Hit
GGTCCGATGGTAGTGGGTTATCAGAA204150.10562618399372421No Hit
GCTGGTCCGATGGTAGTGGGTTATCAGAA200090.10352556039825754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)