FastQCFastQC Report
Tue 4 Jul 2023
SRR6202815_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6202815_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14413701
Total Bases423.5 Mbp
Sequences flagged as poor quality0
Sequence length24-48
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCAATATGGTGACCTCCCGGGAGCGG2560101.776157282574406No Hit
AGGTTGCGGGTTCGACTCCTGCTGGGTA954440.6621755231359385No Hit
GGCTTCTGTCGTGAGTGGCACACGTAGG762460.5289828060121408No Hit
CAAAGCACCCAACTTACACTTAGGAGATT731470.5074824293913132No Hit
GCATCAATATGGTGACCTCCCGGGAGCGG448340.31105126989938253No Hit
AACCTGCATTAAAAATTTCGGTTGGG428310.29715476961815707No Hit
AATACAAGCTTGGGCTGCAGGTCGACC426690.29603083899131805No Hit
GGCGAGCGAGAAAACTAGTGTTAAGGAAC409100.28382717249372663No Hit
AGGCGAGCGAGAAAACTAGTGTTAAGGAA385690.26758568115156545No Hit
GGGCTTCTGTCGTGAGTGGCACACGTAGG366640.2543690895211438No Hit
GGCGAGCGAGAAAACTAGTGTTAAGGAA366360.25417482990662843No Hit
AGGCGAGCGAGAAAACTAGTGTTAAGGAAC319290.2215184011379173No Hit
GGAGCATAGCTGGGTAGCTAAGTACGGAA312640.21690473529317697No Hit
AAGCACCCAACTTACACTTAGGAGATT309360.21462912266599676No Hit
AAAGCACCCAACTTACACTTAGGAGATT259260.1798705273544942No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG253550.17590901878705545No Hit
TACGACTCTTAGCGGTGGATCACTCGGCT229370.15913331350497698No Hit
GGCTTCTGTCGTGAGTGGCACACGTAG218130.15133517755085943No Hit
CTGCTAAACCGCAAGGTGATGTATAGGGG206640.14336359551235314No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCGT197700.13716116353461197No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGAC180320.12510319174790707No Hit
ACAAAGCACCCAACTTACACTTAGGAGATT176400.12238355714469171No Hit
AATACAAGCTTGGGCTGCAGGTCGAC170480.11827635386636645No Hit
CTTAACACAAAGCACCCAACTTACACTT165090.11453685628694532No Hit
TGGACGTACCACTGGTGTTCCAGTTGTTCCG160100.11107487244254616No Hit
ACAGGTTAATATTCCTGTACTTTCTA158070.10966649023730962No Hit
AGGTTGCGGGTTCGACTCCTGCTGGGT155870.10814016469468876No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCGTG153360.10639876600742584No Hit
CATTTATCAGTTGGTGACTCTAGATAACCT145760.1011260050420083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)