FastQCFastQC Report
Tue 4 Jul 2023
SRR6202819_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6202819_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25421605
Total Bases712.4 Mbp
Sequences flagged as poor quality0
Sequence length24-48
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCAATATGGTGACCTCCCGGGAGCGG4965111.9531064226668615No Hit
AACCTGCATTAAAAATTTCGGTTGGG2384790.9380957653932551No Hit
AGGTTGCGGGTTCGACTCCTGCTGGGTA2173030.8547965401869787No Hit
CAAAGCACCCAACTTACACTTAGGAGATT1700920.6690844264160347No Hit
CGCATGAAGATTACGGAAAAGAAGCGT1481690.5828467557418189No Hit
ACAGGTTAATATTCCTGTACTTTCTA1183060.46537580927718764No Hit
GCAAGTTAAAATAAGGCTAGTCCGTTATC1098900.4322701104041228No Hit
ACTGCATAATTTGTGGTAGTGGGGG1044110.4107175766439609No Hit
GGAGCATAGCTGGGTAGCTAAGTACGGAA914460.35971764961338987No Hit
AAGCACCCAACTTACACTTAGGAGATT904490.3557957886608654No Hit
AATACAAGCTTGGGCTGCAGGTCGACC838070.32966840606641473No Hit
TCGCGGATTAGCACTACGCATCGGTTACA832300.3273986831279929No Hit
AAAGCACCCAACTTACACTTAGGAGATT820810.32287890556084087No Hit
GACTGCATAATTTGTGGTAGTGGGGG730670.28742087684864903No Hit
TGGACGTACCACTGGTGTTCCAGTTGTTCCG673020.264743315774122No Hit
AGGTTGCGGGTTCGACTCCTGCTGGGT653370.257013670065285No Hit
CTGCTAAACCGCAAGGTGATGTATAGGGG627920.24700250043221111No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG586030.23052439057250712No Hit
AGCAAGTTAAAATAAGGCTAGTCCGTTATC525810.20683587837982692No Hit
ACTGCATAATTTGTGGTAGTGGGG514780.2024970492618385No Hit
GACTGCATAATTTGTGGTAGTGGGG498650.19615205255529697No Hit
GCATCAATATGGTGACCTCCCGGGAGCGG493900.19428356313458572No Hit
TGGACGTACCACTGGTGTTCCAGTTGTTCC490570.19297365370911868No Hit
TCTTAGTAGCAAGAGGAAGAGAAAATAAA439220.17277429965574556No Hit
AATACAAGCTTGGGCTGCAGGTCGAC390030.1534246165810538No Hit
AGCTTGGGCTGCAGGTCGACCCGT378100.1487317578886148No Hit
GGCATAGAGGGTGATACCCCCGTATGTG364800.14349998751062334No Hit
GAGCTTTAATTTATTAATGCAAACAGT352980.1388503990995061No Hit
ACTGCATAATTTGTGGTAGTGGGGGA346740.13639579404998228No Hit
GATTAGCACTACGCATCGGTTACA343240.13501901237156347No Hit
GGTCGGTTTCTATCTACTTCAAATTCCT334310.13150625226062634No Hit
ACAACAGGTTAATATTCCTGTACTTTCTA328110.12906738185885588No Hit
CGCGGATTAGCACTACGCATCGGTTACA310650.12219920811451519No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCGT278980.10974130075579415No Hit
GCAATAAACGAAAGTTTAACTAAGCTAT274490.10797508654547971No Hit
GAAGCCTCCTCAGAGATAAGTATTCCCT262410.10322322292396567No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGAC262050.10308161109418544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)