FastQCFastQC Report
Tue 4 Jul 2023
SRR6202820_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6202820_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21311324
Total Bases598.7 Mbp
Sequences flagged as poor quality0
Sequence length24-48
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCTGCATTAAAAATTTCGGTTGGG4147341.946073364564304No Hit
GGCATCAATATGGTGACCTCCCGGGAGCGG1598240.7499487127125466No Hit
AGGTTGCGGGTTCGACTCCTGCTGGGTA1446190.678601667357692No Hit
ACTGCATAATTTGTGGTAGTGGGGG1348830.6329170350936432No Hit
AGGTTGCGGGTTCGACTCCTGCTGGGT992190.46556938461448943No Hit
ACTGCATAATTTGTGGTAGTGGGG959360.45016442901435877No Hit
GACTGCATAATTTGTGGTAGTGGGG875150.41065022520421535No Hit
CAAAGCACCCAACTTACACTTAGGAGATT839860.3940909537108065No Hit
GCAAGTTAAAATAAGGCTAGTCCGTTATC706840.33167343333525406No Hit
CGCATGAAGATTACGGAAAAGAAGCGT684630.32125174390854366No Hit
ACAGGTTAATATTCCTGTACTTTCTA647100.3036413880245075No Hit
GGCATAGAGGGTGATACCCCCGTATGT552530.2592659189077131No Hit
GGAGCATAGCTGGGTAGCTAAGTACGGAA536460.25172532687316845No Hit
AATACAAGCTTGGGCTGCAGGTCGACC506020.2374418407791088No Hit
CGCATGAAGATTACGGAAAAGAAGCG449660.2109958067363623No Hit
TCGCGGATTAGCACTACGCATCGGTTACA425930.19986088147315484No Hit
ACCTGCATTAAAAATTTCGGTTGGG424680.19927433884445658No Hit
AAGCACCCAACTTACACTTAGGAGATT396330.1859715520255804No Hit
GGCGAGCGAGAAAACTAGTGTTAAGGAA393440.18461546546803004No Hit
AAAGCACCCAACTTACACTTAGGAGATT381930.1792145809429766No Hit
AATACAAGCTTGGGCTGCAGGTCGAC353280.16577102389321283No Hit
GACTGCATAATTTGTGGTAGTGGGGG338980.15906097622090493No Hit
GTTCAACTTTAAATTTGCCCACAGAAC337010.15813658503807645No Hit
TGGACGTACCACTGGTGTTCCAGTTGTTCCG329380.1545563288325024No Hit
ACAACAGGTTAATATTCCTGTACTTTCTA323360.15173153953269164No Hit
GGCATAGAGGGTGATACCCCCGTATGTG320900.15057722363941348No Hit
AAACCTGCATTAAAAATTTCGGTTGGG312660.14671073463103465No Hit
TCTTAGTAGCAAGAGGAAGAGAAAATAAA306780.14395163810563813No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG306350.14374986744136592No Hit
GAGCGAACGAGAAAGAGCCCAAACCC283530.13304194521185075No Hit
GATCGCCGGCTAAGGTCCCAAAATCG263660.12371826358606344No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGAC249110.11689090738801589No Hit
CTGCTAAACCGCAAGGTGATGTATAGGGG243480.11424911938835898No Hit
TGGACGTACCACTGGTGTTCCAGTTGTTCC239320.1122971055200512No Hit
GCATCAATATGGTGACCTCCCGGGAGCGG214660.10072579254109225No Hit
GCATAGCTGGGTAGCTAAGTACGGAAA214620.10070702317697389No Hit
AGCAAGTTAAAATAAGGCTAGTCCGTTATC214360.10058502231020466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)