FastQCFastQC Report
Tue 4 Jul 2023
SRR6202821_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6202821_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15986081
Total Bases449.3 Mbp
Sequences flagged as poor quality0
Sequence length24-48
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCAATATGGTGACCTCCCGGGAGCGG3312712.072246474917774No Hit
AACCTGCATTAAAAATTTCGGTTGGG1875391.173139307876646No Hit
AGGTTGCGGGTTCGACTCCTGCTGGGTA1004780.6285342855450313No Hit
AGGTTGCGGGTTCGACTCCTGCTGGGT745750.46649957547443927No Hit
GCATCAATATGGTGACCTCCCGGGAGCGG585180.3660559457943445No Hit
ACAGGTTAATATTCCTGTACTTTCTA563730.3526380230401685No Hit
CGCATGAAGATTACGGAAAAGAAGCGT520600.3256583023694175No Hit
AATACAAGCTTGGGCTGCAGGTCGACC492030.3077865050227132No Hit
CAAAGCACCCAACTTACACTTAGGAGATT490140.30660422651430325No Hit
GGCGAGCGAGAAAACTAGTGTTAAGGAA487190.3047588711704889No Hit
GCAAGTTAAAATAAGGCTAGTCCGTTATC478080.29906016365111626No Hit
TCGCGGATTAGCACTACGCATCGGTTACA442880.2770410083622121No Hit
ACTGCATAATTTGTGGTAGTGGGGG425620.26624411574043694No Hit
GATTAGCACTACGCATCGGTTACA384220.2403465865086008No Hit
ACTGCATAATTTGTGGTAGTGGGG376830.23572381498629963No Hit
GGAGCATAGCTGGGTAGCTAAGTACGGAA367180.22968731360738132No Hit
AAGCACCCAACTTACACTTAGGAGATT338860.21197190230676297No Hit
GGCTTCTGTCGTGAGTGGCACACGTAGG338500.2117467064003992No Hit
GGCGAGCGAGAAAACTAGTGTTAAGGAAC325410.20355833302733795No Hit
GACTGCATAATTTGTGGTAGTGGGG310890.194475431470665No Hit
AGGCGAGCGAGAAAACTAGTGTTAAGGAA280720.17560276342901054No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG242820.15189463884237794No Hit
AATACAAGCTTGGGCTGCAGGTCGAC241950.15135041540199876No Hit
CGCATGAAGATTACGGAAAAGAAGCG222690.1393024344115359No Hit
TCTTAGTAGCAAGAGGAAGAGAAAATAAA207520.12981292913503942No Hit
GGCATAGAGGGTGATACCCCCGTATGT207120.12956271146130185No Hit
GAGCTTTAATTTATTAATGCAAACAGT199390.12472725491632376No Hit
GAGCGAACGAGAAAGAGCCCAAACCC197560.1235825090589745No Hit
ACTTTGCAAGGAGAGCCAAAGCTAAGAC167230.10460975394782498No Hit
GGCATAGAGGGTGATACCCCCGTATGTG165880.10376526929896075No Hit
AGCTTGGGCTGCAGGTCGACCCGT165860.10375275841527389No Hit
TGGACGTACCACTGGTGTTCCAGTTGTTCCG162550.10168220716509568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)