FastQCFastQC Report
Mon 14 Aug 2023
SRR6215549_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6215549_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59952761
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTG3130910.5222294933172469No Hit
CCCATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGC1487830.24816705272339332No Hit
CTAATATTTATTAATACTAGAGTAGCTCCTCCGATTAGGTGTATTAATAA1058300.17652231229183923No Hit
CTCTTGTTTTGTACAGCAGTCAGCCAGTTCACCATAGTTTTCACGGAGGT1001360.1670248347694946No Hit
CTCCTAAGTATTTTTCAGGTGTGGTACCCTCTGGAAGTTTAACGAAACAT907520.15137251143446087No Hit
GTCCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTG906810.1512540848619132No Hit
CTGGAGTTTTATTTCATAGAAGTGAGATTGAGTTGATGGTTATAGAGTTA885910.1477680068812844No Hit
GTCCGCTTCTCCGTTCACAATCTTTTCAATGCAGTCCTCAGTGGTCTCTG870520.1452009858228214No Hit
CTTCGGTGTTATCCAGGACAGTCTGGTGTTTCACAAAGGCTACATCTCCT838250.13981841470153475No Hit
CTCCGCTCCTAAGTATTTTTCAGGTGTGGTACCCTCTGGAAGTTTAACGA831960.13876925534755605No Hit
CATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGCCA795070.132616077514762No Hit
CTCCCCTTTAAAGAACAGCATGGTCCCATTGTGATCCATGGTCGCAGCAT785050.13094476165993424No Hit
GCCGCCTTTCCACCAGGGATCCACTACAGCACTTGGTAACATGCTCACTC783540.13069289669578354No Hit
GTCCTCAACAAAATCAGCAGCAATGGCAGGCAGATCAGCAGGCATGGTGT778730.1298905983662704No Hit
GTTGATTTCGTCTATTATATATAGAATGCGTAGAGAGGGGAGAGCAATTA726080.12110868421889695No Hit
CTTGATTTATGTGGTTTCGTTTACCTTCTATAAGGCTATGATGAGCTCAT710990.11859170255728506No Hit
CCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTGGT692600.11552428753031074No Hit
GTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTGGGATGGCATCA684530.11417822775501532No Hit
GGCCGCCTTTCCACCAGGGATCCACTACAGCACTTGGTAACATGCTCACT681360.11364947812828836No Hit
CCATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGCC676590.1128538517183554No Hit
CTCCGATTAGGTGTATTAATAAGTGTCCTGCAGTAATGTTAGCTGTAAGC673890.11240349714669522No Hit
GTGGTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGT654830.10922432746675337No Hit
CTCAGCTTTAAACTCTTTGGGGACATATGTTTCATCAACTGTCAGAGCAG651820.10872226551834703No Hit
GTCGTTTGTTGGGATTATATATGAATCAAAGCATAGGTCTTCATAGTCAG649590.1083503060017536No Hit
GTCGTAGTAGGCAAACAATAAGGAATGTTGATCCAATAATTACATGGAGT642830.10722275159270812No Hit
CCCCAATTCAGGTTAAGATAAGTAGGTTGGCTACTAGGATTCAGTACAAA640590.10684912409621967No Hit
GTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTGGAC635360.10597677061111496No Hit
CTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGCCCAGGAAATGT630120.10510274914611523No Hit
CTTTAAAGAACAGCATGGTCCCATTGTGATCCATGGTCGCAGCATCAAAG630090.10509774520643012No Hit
CTCTGATCTTCAGGAAGTGTACAACACTTGGTGCCCACTCTTCCTAGGTT601640.10035234240504787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)