FastQCFastQC Report
Mon 14 Aug 2023
SRR6215550_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6215550_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48518552
Total Bases4.8 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTG3148880.6490053536634811No Hit
CCCATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGC1726760.3558968536406445No Hit
GTCCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTG1158100.23869220169637378No Hit
CTTCGGTGTTATCCAGGACAGTCTGGTGTTTCACAAAGGCTACATCTCCT873040.17993941781279868No Hit
CTCCTAAGTATTTTTCAGGTGTGGTACCCTCTGGAAGTTTAACGAAACAT870760.17946949447295954No Hit
CTCCGCTCCTAAGTATTTTTCAGGTGTGGTACCCTCTGGAAGTTTAACGA824600.1699556079084965No Hit
CCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTGGT808810.16670118267338235No Hit
CATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGCCA804860.1658870610977838No Hit
GTGGTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGT791970.16323034537386855No Hit
CTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTGGTT715320.14743226467269674No Hit
GCCGCCTTTCCACCAGGGATCCACTACAGCACTTGGTAACATGCTCACTC668570.13779677513871394No Hit
GTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTGGAC652550.13449494535615986No Hit
GGCCGCCTTTCCACCAGGGATCCACTACAGCACTTGGTAACATGCTCACT651500.13427853329176023No Hit
CTAATATTTATTAATACTAGAGTAGCTCCTCCGATTAGGTGTATTAATAA645040.1329470838288826No Hit
CCATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGCC631810.1302202918174475No Hit
CTCAGCTTTAAACTCTTTGGGGACATATGTTTCATCAACTGTCAGAGCAG625770.1289754071803297No Hit
CTCCTCCATGTGCTCACGCACCTCCTCTAGGCGGTCACGGGCCTGGTTGC601600.12399380756457859No Hit
GTCGTAGTAGGCAAACAATAAGGAATGTTGATCCAATAATTACATGGAGT589300.12145869481018313No Hit
GTCCGCTTCTCCGTTCACAATCTTTTCAATGCAGTCCTCAGTGGTCTCTG565280.11650801120363197No Hit
CCCCTCTTCCATGGCTCCCAGCCTGCCCTGCCATGTGCAGCCTTCTAGTG559710.11535999672867403No Hit
CCCCAATTCAGGTTAAGATAAGTAGGTTGGCTACTAGGATTCAGTACAAA541920.11169335803756054No Hit
GGGGACATATGTTTCATCAACTGTCAGAGCAGAGAAGCATGGCCGCCTTT531290.10950244351892446No Hit
GTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTGGGATGGCATCA530350.10930870319460483No Hit
CTCCGATTAGGTGTATTAATAAGTGTCCTGCAGTAATGTTAGCTGTAAGC527160.108651222732286No Hit
GTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTGGACCCTCAGT526830.10858320751204611No Hit
CTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGCCCAGGAAATGT524920.10818954366156681No Hit
GGGGTCTTCTCATGCAGCAGACACACACGGTTCAGGATTGCAGACAGATA524060.10801229187548714No Hit
CTCTGATCTTCAGGAAGTGTACAACACTTGGTGCCCACTCTTCCTAGGTT508850.10487740854261272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)