FastQCFastQC Report
Tue 22 Aug 2023
SRR6215551_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6215551_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42449890
Total Bases4.2 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGTAGTAGGCAAACAATAAGGAATGTTGATCCAATAATTACATGGAGT1154020.27185465027117856No Hit
CTCCTATTAGATTGATTGAAGGGGGTAGAGCTAGATTAGCTAGACTTGCT1107160.2608157524083101No Hit
GTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTGGGATGGCATCA1035630.24396529649429008No Hit
GCTTGATTTAGTCGGCCTGGGATGGCATCAGTTTTAAGTCCTAGGGAGGG1030920.2428557529831055No Hit
GTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTG881730.20771078558743028No Hit
GTCCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTG808370.19042923314995633No Hit
GGGGGTTCGATTCCTTCCTTTCTTATTTTACTTTTACATAGGTTGGTTCC793090.18682969496505172No Hit
CTGTAATTAGTTTTGGACTGGTAGTTAGAAGAATAAGTGGAATTATGTGA698730.1646011332420414No Hit
CTCCGATTAGGTGTATTAATAAGTGTCCTGCAGTAATGTTAGCTGTAAGC609000.14346326928055644No Hit
CTTGATTTATGTGGTTTCGTTTACCTTCTATAAGGCTATGATGAGCTCAT588980.13874712042834506No Hit
GTCAGTATCATGCTGCGGCTTCAAATCCGAAGTGATGTTTTGATGTGAAG578030.1361676084437439No Hit
GGTAGCTGTTGGTGGGCTAATATTTATTAATACTAGAGTAGCTCCTCCGA571970.13474004290706054No Hit
CTTGATTTAGTCGGCCTGGGATGGCATCAGTTTTAAGTCCTAGGGAGGGG565900.13331012165166978No Hit
GCTTGATTTATGTGGTTTCGTTTACCTTCTATAAGGCTATGATGAGCTCA536140.12629950277845242No Hit
CTCATCAATAAATGGAGACGTATAGGAAAAGTCAGACTACGTCTACAAAA516180.12159748823848543No Hit
CATAGAATAACCCTGGTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGG514840.12128182193169405No Hit
GGGCAAGTGAGCTTTTTAGTTTGTGTCGGAAGCCTGTAATTACGGCTCCA514320.12115932455890935No Hit
CTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATT500410.11788251983691832No Hit
CTCGAATGTGTGATATGGTGGAGGGCAGCCATGAAGTCATTCTAAATTTG492940.11612279796249178No Hit
GTCGTTTGTTGGGATTATATATGAATCAAAGCATAGGTCTTCATAGTCAG487320.11479888404893393No Hit
CCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTGGT456060.10743490736960684No Hit
GTTCCTTAGGGTGTTGATTTTACACCAACAGAAAAGATGAGTCCTGAGTC433780.10218636608952344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)