FastQCFastQC Report
Mon 14 Aug 2023
SRR6215552_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6215552_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39994933
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTATTAGATTGATTGAAGGGGGTAGAGCTAGATTAGCTAGACTTGCT1106610.2766875493953197No Hit
GTCGTAGTAGGCAAACAATAAGGAATGTTGATCCAATAATTACATGGAGT1022380.255627381598564No Hit
GTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTGGGATGGCATCA1012970.2532745835578722No Hit
GCTTGATTTAGTCGGCCTGGGATGGCATCAGTTTTAAGTCCTAGGGAGGG1008480.25215194134717017No Hit
GTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTG864470.21614488015269331No Hit
GTCCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTG788260.19708996637149012No Hit
GGGGGTTCGATTCCTTCCTTTCTTATTTTACTTTTACATAGGTTGGTTCC768600.1921743436849863No Hit
CTGTAATTAGTTTTGGACTGGTAGTTAGAAGAATAAGTGGAATTATGTGA754830.18873140755105153No Hit
CTTGATTTAGTCGGCCTGGGATGGCATCAGTTTTAAGTCCTAGGGAGGGG577060.14428327708412464No Hit
CTCCGATTAGGTGTATTAATAAGTGTCCTGCAGTAATGTTAGCTGTAAGC571020.14277308578064127No Hit
CTTGATTTATGTGGTTTCGTTTACCTTCTATAAGGCTATGATGAGCTCAT569960.1425080522075134No Hit
CATAGAATAACCCTGGTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGG517710.1294438973056912No Hit
GGTAGCTGTTGGTGGGCTAATATTTATTAATACTAGAGTAGCTCCTCCGA513920.12849627726592266No Hit
GTCAGTATCATGCTGCGGCTTCAAATCCGAAGTGATGTTTTGATGTGAAG513730.12844877124809784No Hit
CTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATT504920.12624599221106333No Hit
GCTTGATTTATGTGGTTTCGTTTACCTTCTATAAGGCTATGATGAGCTCA504910.12624349189433573No Hit
GGGCAAGTGAGCTTTTTAGTTTGTGTCGGAAGCCTGTAATTACGGCTCCA484890.12123785780563752No Hit
CTCATCAATAAATGGAGACGTATAGGAAAAGTCAGACTACGTCTACAAAA479300.11984018075489712No Hit
GTCGTTTGTTGGGATTATATATGAATCAAAGCATAGGTCTTCATAGTCAG456050.11402694436317722No Hit
CTCGAATGTGTGATATGGTGGAGGGCAGCCATGAAGTCATTCTAAATTTG454190.11356188545183961No Hit
CCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTGGT433550.10840123172602889No Hit
GTTCCTTAGGGTGTTGATTTTACACCAACAGAAAAGATGAGTCCTGAGTC429800.10746361295317083No Hit
GGGTGTTCTACTGGTTGGCCCCCAATTCAGGTTAAGATAAGTAGGTTGGC413190.10331058686859158No Hit
CTGGTAGTTAGAAGAATAAGTGGAATTATGTGAAGGGCTATTAGTGTTAG412980.10325808021731152No Hit
CTTAGGGTGTTGATTTTACACCAACAGAAAAGATGAGTCCTGAGTCTTCA412850.10322557609985246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)