FastQCFastQC Report
Mon 14 Aug 2023
SRR6215553_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6215553_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38197237
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATT1428730.3740401432700486No Hit
GTCGTAGTAGGCAAACAATAAGGAATGTTGATCCAATAATTACATGGAGT1252750.32796874810604754No Hit
GTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTGGGATGGCATCA1047720.2742920908127465No Hit
CTCCTATTAGATTGATTGAAGGGGGTAGAGCTAGATTAGCTAGACTTGCT983950.2575971659939697No Hit
GGATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATGGATAGG974720.25518076084927294No Hit
GCTTGATTTAGTCGGCCTGGGATGGCATCAGTTTTAAGTCCTAGGGAGGG904340.2367553443721597No Hit
GGGGGTTCGATTCCTTCCTTTCTTATTTTACTTTTACATAGGTTGGTTCC878060.2298752655853092No Hit
CTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGAT773080.2023916023035907No Hit
GGGTAATCATTTATTGAACAGGAAGAGGAAGAAATTCATGAAAAATTGTC742440.19437007969974374No Hit
CTCCGATTAGGTGTATTAATAAGTGTCCTGCAGTAATGTTAGCTGTAAGC721440.18887229984723763No Hit
GGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAGTC708220.18541131653056475No Hit
GTCAGTATCATGCTGCGGCTTCAAATCCGAAGTGATGTTTTGATGTGAAG702670.1839583318552596No Hit
GGTAGCTGTTGGTGGGCTAATATTTATTAATACTAGAGTAGCTCCTCCGA672090.17595251719384836No Hit
CTCATCAATAAATGGAGACGTATAGGAAAAGTCAGACTACGTCTACAAAA658910.1725020058387993No Hit
CTGTAATTAGTTTTGGACTGGTAGTTAGAAGAATAAGTGGAATTATGTGA655740.17167210288011145No Hit
ATCAAAGAGAAATTTAAAGAAGTCTTTGATTCTTGATGAGGTATCCTAGG635280.16631569450952696No Hit
GCTTGATTTATGTGGTTTCGTTTACCTTCTATAAGGCTATGATGAGCTCA624710.16354847865043223No Hit
CTGGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGA600970.1573333694266944No Hit
CTTGATTTATGTGGTTTCGTTTACCTTCTATAAGGCTATGATGAGCTCAT595630.15593536254991427No Hit
TGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATTT574000.150272649301833No Hit
GGGCAAGTGAGCTTTTTAGTTTGTGTCGGAAGCCTGTAATTACGGCTCCA555150.14533773738660732No Hit
CATAGAATAACCCTGGTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGG549320.14381144897993536No Hit
GGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAG541110.1416620788566461No Hit
CTCGAATGTGTGATATGGTGGAGGGCAGCCATGAAGTCATTCTAAATTTG537870.1408138499651166No Hit
CCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGA521810.1366093573731524No Hit
GGATAGACTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCA496240.12991515590512476No Hit
GTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTG486900.12746995286596252No Hit
CTTGATTTAGTCGGCCTGGGATGGCATCAGTTTTAAGTCCTAGGGAGGGG485990.1272317157390206No Hit
GTCGTTTGTTGGGATTATATATGAATCAAAGCATAGGTCTTCATAGTCAG476170.12466084916037251No Hit
GTCCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTG461070.12070768364738005No Hit
GGGTGTTCTACTGGTTGGCCCCCAATTCAGGTTAAGATAAGTAGGTTGGC440260.11525964561258711No Hit
ATCCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAG435110.11391138055352014No Hit
GTTTCGTTTACCTTCTATAAGGCTATGATGAGCTCATGTAATTGAAACAC434740.1138145149084998No Hit
GCAAGGGTAATCATTTATTGAACAGGAAGAGGAAGAAATTCATGAAAAAT430080.11259453137932462No Hit
GGTATATCAAAGAAAAATTTAAAGAAGTCTTTGATTCTTGATGAGGTATC407740.10674594081242054No Hit
GGGTATATCAAAGAAAAATTTAAAGAAGTCTTTGATTCTTGATGAGGTAT394800.1033582612271144No Hit
GTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGAT393850.10310955213854865No Hit
CAGGATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATGGATA389320.10192360248465092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)