FastQCFastQC Report
Mon 14 Aug 2023
SRR6215555_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6215555_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30759613
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTG1766780.57438303921444No Hit
CCCATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGC1229400.39967993095361765No Hit
GTCGTAGTAGGCAAACAATAAGGAATGTTGATCCAATAATTACATGGAGT879560.2859463804047209No Hit
GTCCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTG835330.27156713577638314No Hit
CTTCGGTGTTATCCAGGACAGTCTGGTGTTTCACAAAGGCTACATCTCCT701970.22821158380633721No Hit
CTCCTAAGTATTTTTCAGGTGTGGTACCCTCTGGAAGTTTAACGAAACAT663400.21567241434409462No Hit
GTGGTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGT639430.2078797285258433No Hit
CTCCGCTCCTAAGTATTTTTCAGGTGTGGTACCCTCTGGAAGTTTAACGA592330.1925674422496798No Hit
CATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGCCA486370.1581196746526037No Hit
CCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCG480080.15607478546625408No Hit
CCATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGCC471880.15340895218675216No Hit
GTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTGGGATGGCATCA468380.15227109651867207No Hit
CTCCTACTCGTCGCGGCGTAGCGTCCGCGGGGCCCGACGCCGCGGGGGCG438220.1424660316760162No Hit
CTCCCCGCCCCCAGCTTCAGTGGTGGCTATGTCCTGTCTGCCAAAACCTT432570.1406292075261155No Hit
GTCCGCTTCTCCGTTCACAATCTTTTCAATGCAGTCCTCAGTGGTCTCTG409350.1330803479224527No Hit
GGGGACATATGTTTCATCAACTGTCAGAGCAGAGAAGCATGGCCGCCTTT406960.13230335505196375No Hit
CCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTGGT395190.12847690899102013No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA392950.12774868136344888No Hit
GGGGGTTCGATTCCTTCCTTTCTTATTTTACTTTTACATAGGTTGGTTCC389800.12672461126217682No Hit
CTCCTCCATGTGCTCACGCACCTCCTCTAGGCGGTCACGGGCCTGGTTGC379840.12348659913244031No Hit
CTCGGAGAATCTTTATTAAGCAAGGGCCACCAGAGGGCCAGAGAGGTGCT379400.12334355441988168No Hit
CTTGATTTATGTGGTTTCGTTTACCTTCTATAAGGCTATGATGAGCTCAT378520.1230574649947644No Hit
CTGGTAGTTAGAAGAATAAGTGGAATTATGTGAAGGGCTATTAGTGTTAG364090.11836624862607992No Hit
GTCGTTTGTTGGGATTATATATGAATCAAAGCATAGGTCTTCATAGTCAG360770.1172869112495011No Hit
GCTTGATTTATGTGGTTTCGTTTACCTTCTATAAGGCTATGATGAGCTCA355570.11559638282835354No Hit
GTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTGGAC350370.11390585440720596No Hit
GGGGAGTGGAAGCGGGCACCTCACTGGGCAGTCAGAGTCTCGCTGGCCTT344600.11203001806297107No Hit
CCTCCATCTTGGAGCGCACCTCCTCCATGTGCTCACGCACCTCCTCTAGG339170.1102647162693497No Hit
CGGGAGGATTGGCTTCAGCGCAGCACTTTTCCAGAGTGGCTTCATATTTC335530.10908134637454639No Hit
CTCCCCTTTAAAGAACAGCATGGTCCCATTGTGATCCATGGTCGCAGCAT333590.10845064923281056No Hit
GTCCTCCATCAGTGCCGTCAGTTCTTGTGTGACTTGGGAGCTCTGCAGCT325440.10580107103428121No Hit
CTCAGCTTTAAACTCTTTGGGGACATATGTTTCATCAACTGTCAGAGCAG320000.10403251822446531No Hit
CTCCGATTAGGTGTATTAATAAGTGTCCTGCAGTAATGTTAGCTGTAAGC313830.10202664123244982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)