FastQCFastQC Report
Tue 22 Aug 2023
SRR6215565_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6215565_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41604983
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATT1481830.3561664716940276No Hit
GGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAGTC1398550.33614963861420155No Hit
GGATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATGGATAGG1291760.3104820400960145No Hit
GTCTGTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAAT1263910.30378813037851743No Hit
CTGGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGA1227760.2950992673161289No Hit
CTCGGGCCTGGAGGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCT1225260.2944983777544147No Hit
GGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAG1189560.2859176748131348No Hit
CCCCATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCT1168120.2807644459318731No Hit
CCCATCCTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTG1082880.26027651543566305No Hit
CCCATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTT1037910.24946771399954665No Hit
CGGGCCTGGAGGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCTCT966850.23238802909738002No Hit
CTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGAT962910.2314410271481183No Hit
CATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCT930310.22360542726336408No Hit
CCATCCTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTGT767530.184480306121024No Hit
TGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATTT748980.18002170557310407No Hit
CTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTCAC731830.17589960317974412No Hit
CCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGA726370.17458726037696012No Hit
GTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTG717890.1725490429836253No Hit
TGGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAA707450.17003972817390647No Hit
CCAGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCGGAGCACTCTTC706940.16991714670331676No Hit
GGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAGT645680.1551929488830701No Hit
CTCCAGAAAAAGTCTAAAGTTGCCATTATCTTCTATCTTTTCTCTTTTGT637810.15330134854279354No Hit
ATCCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAG629730.151359273479333No Hit
CTCTTTTGTCAGAGGCCAGGATAATAGTATGCCATTCCCCATTAATCTTT610370.14670598471341761No Hit
CATCCTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTGTC594860.14297806587254225No Hit
GTCCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTG582140.13992073978254No Hit
CCCCATCCTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCT574260.1380267358840166No Hit
GGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCTCTAAGGATTCCA564930.1357842160396989No Hit
GCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAGTCTCCA556060.13365225987473664No Hit
ATCAAAGAGAAATTTAAAGAAGTCTTTGATTCTTGATGAGGTATCCTAGG540620.12994116594158928No Hit
GGATAGACTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCA539110.12957822864631383No Hit
ATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCTG528920.12712900279276643No Hit
CTCAGCTTTAAACTCTTTGGGGACATATGTTTCATCAACTGTCAGAGCAG523430.12580944931524188No Hit
CAGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCGGAGCACTCTTCA523240.1257637817085516No Hit
GGGTAATCATTTATTGAACAGGAAGAGGAAGAAATTCATGAAAAATTGTC520450.12509318895767846No Hit
ATCCTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTGTCT511200.12286989757933564No Hit
GTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGAT497840.11965874376153453No Hit
CTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTGTCTTAG497210.11950731959198253No Hit
AGGGGCTCTAGCGGTGGCCAGTGGAGCAGCTGGGGTGGGAAGACTGGGCC487180.11709655067038485No Hit
GGGTATATCAAAGAAAAATTTAAAGAAGTCTTTGATTCTTGATGAGGTAT485530.11669996355965341No Hit
CCAGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCCGAGCACTCTTC470060.11298165895176546No Hit
CAGGATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATGGATA466150.11204186767724433No Hit
GGTATATCAAAGAAAAATTTAAAGAAGTCTTTGATTCTTGATGAGGTATC464360.11161163075105691No Hit
CCTGGAGGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCTCTAAGG455580.10950130661031637No Hit
ATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATGGATAGGAA447390.10753279240614039No Hit
GCCATAAGAAAGTTATCATAGTCTGTCTTAGGTATAGTAAATGTATTGAA434530.10444181650068214No Hit
CAGGATAATAGTATGCCATTCCCCATTAATCTTTTCTACATTAAAGTTCC433230.10412935392859071No Hit
CTCGTGTGTCTTCTCAAAGTATGCCTTGACCTGGCTCTGAATCTCTGAGG431510.10371594191013128No Hit
GTGGGTTTTGGCCCTGGTGTGGTACTCGTTCAAGGTAGGGTTGCTCTTGA422630.10158158218692218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)