FastQCFastQC Report
Tue 22 Aug 2023
SRR6215566_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6215566_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32294898
Total Bases3.2 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATT1176660.3643485729541552No Hit
CCCCATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCT1098640.3401899581785333No Hit
GGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAGTC1089290.33729476402123953No Hit
GGATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATGGATAGG1016510.31475869655943794No Hit
CCCATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTT986060.3053299626461121No Hit
CTGGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGA964780.2987406865319717No Hit
GTCTGTCTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAAT964560.29867256431650596No Hit
CTCGGGCCTGGAGGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCT942940.29197800841482763No Hit
GGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAG913060.28272577296884477No Hit
CATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCT882820.27336206480664527No Hit
CGGGCCTGGAGGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCTCT750950.23252898956361467No Hit
CCCATCCTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTG748060.231634111369542No Hit
CTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGAT728880.2256950927666655No Hit
TGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATTT596350.18465765087723765No Hit
CTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTCAC577290.17875578984643334No Hit
TGGGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAA563350.1744393185573771No Hit
GTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTG555670.172061233944755No Hit
CCAGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCGGAGCACTCTTC550130.17034579270075415No Hit
CCATCCTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTGT544010.16845075652507094No Hit
CCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGA543730.1683640555235691No Hit
CTCCAGAAAAAGTCTAAAGTTGCCATTATCTTCTATCTTTTCTCTTTTGT525820.1628182878917902No Hit
CTCTTTTGTCAGAGGCCAGGATAATAGTATGCCATTCCCCATTAATCTTT524120.16229188895410043No Hit
GGGATGCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAGT503300.15584505019957023No Hit
ATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCTG502170.1554951497292235No Hit
ATCCTAGGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTGAGACAG485810.15042933407004414No Hit
GTCCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTG442690.13707737983875967No Hit
GGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCTCTAAGGATTCCA442340.13696900358688235No Hit
CATCCTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTGTC432960.1340645200365705No Hit
GGATAGACTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCA432520.133928275605639No Hit
ATCAAAGAGAAATTTAAAGAAGTCTTTGATTCTTGATGAGGTATCCTAGG431820.1337115231018844No Hit
GCTGTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAGTCTCCA425410.13172668946035995No Hit
CAGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCGGAGCACTCTTCA415890.12877885540929715No Hit
CTCAGCTTTAAACTCTTTGGGGACATATGTTTCATCAACTGTCAGAGCAG400090.1238864417531215No Hit
GGGTAATCATTTATTGAACAGGAAGAGGAAGAAATTCATGAAAAATTGTC394690.12221435100987159No Hit
CAGGATAATAGTATGCCATTCCCCATTAATCTTTTCTACATTAAAGTTCC393300.12178394246670171No Hit
GTGGATAGACTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGAT393250.12176846014500493No Hit
GGGTATATCAAAGAAAAATTTAAAGAAGTCTTTGATTCTTGATGAGGTAT378250.11712376363597743No Hit
ATCCTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTGTCT377860.11700300152674271No Hit
CAGGATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATGGATA377650.11693797577561632No Hit
CTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCTGTCTTAG369330.1143617174452757No Hit
CCCCATCCTTTTCGTTAATGAGATGAGCCATAAGAAAGTTATCATAGTCT369050.11427501644377387No Hit
CCAGCCTTTTCTGTTTTGTCAGCAACCATAGATAATTCCGAGCACTCTTC364940.11300236960030033No Hit
ATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATGGATAGGAA364550.11288160749106561No Hit
GGTATATCAAAGAAAAATTTAAAGAAGTCTTTGATTCTTGATGAGGTATC364280.11279800295390312No Hit
CCTGGAGGCAGCGATTGGCATTGGATAGGTCAATGATATTTTCTCTAAGG357680.11075433648993101No Hit
AGGGGCTCTAGCGGTGGCCAGTGGAGCAGCTGGGGTGGGAAGACTGGGCC353470.10945072500306394No Hit
CTCGTGTGTCTTCTCAAAGTATGCCTTGACCTGGCTCTGAATCTCTGAGG349740.10829574380448578No Hit
CCATTATCTTCTATCTTTTCTCTTTTGTCAGAGGCCAGGATAATAGTATG346200.10719959542835529No Hit
GCCATAAGAAAGTTATCATAGTCTGTCTTAGGTATAGTAAATGTATTGAA342660.10610344705222478No Hit
CCATTAATCTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTC338440.10479673910101837No Hit
GTCTTCTCAAAGTATGCCTTGACCTGGCTCTGAATCTCTGAGGTCTTGGC335750.10396379019373277No Hit
GTGGGTTTTGGCCCTGGTGTGGTACTCGTTCAAGGTAGGGTTGCTCTTGA334480.10357053922263511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)